Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3323

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3322: 11690 - HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923, at 393973 to 395198 11690 mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395494 to 396830 11691 mRNA_3324: 11692 - HMMPfam-RTA1 like protein-PF04479, at 397238 to 398541 11692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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394,946 + 11690 mRNA_3322 0.79 -1.6
394,988 + 11690 mRNA_3322 0.83 -0.7
395,114 - -2.5
395,139 + -0.5
395,156 + -0.6
395,247 - -1.7
395,254 - -1.3
395,254 - -0.6
395,259 + -0.3
395,263 + -1.0
395,266 - -2.3
395,268 + -0.7
395,275 + -1.2
395,284 - -0.2
395,286 + -2.9
395,299 - -1.5
395,306 + -2.7
395,307 - -2.3
395,321 - -2.6
395,358 + -2.0
395,363 + 0.2
395,367 - -1.8
395,373 + -1.0
395,379 + -2.0
395,388 - -0.1
395,389 + -0.6
395,393 + -1.3
395,395 + 0.6
395,396 - -1.9
395,401 + -0.5
395,416 + 0.4
395,422 - 0.0
395,433 + -2.3
395,452 + -2.9
395,542 - -0.5
395,576 + -1.8
395,586 + 1.3
395,590 - -0.3
395,696 + 11691 mRNA_3323 0.15 1.5
395,707 - 11691 mRNA_3323 0.16 0.1
395,709 + 11691 mRNA_3323 0.16 -3.1
395,718 + 11691 mRNA_3323 0.17 -1.9
396,203 - 11691 mRNA_3323 0.53 -2.3
396,275 - 11691 mRNA_3323 0.58 -0.9
396,446 + 11691 mRNA_3323 0.71 -2.9
396,581 + 11691 mRNA_3323 0.81 0.0
396,998 + -1.6
397,010 - -0.2
397,011 - -1.0
397,052 + -0.6
397,151 - -2.5
397,170 - -0.6
397,173 + -1.4
397,182 - 0.6
397,196 + -1.4
397,296 - -0.9
397,723 - 11692 mRNA_3324 0.37 -0.2