Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3318

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381412 to 382785 11685 mRNA_3318: 11686 - K14640 SLC20A, PIT solute carrier family 20 (sodium-dependent phosphate transporter), at 383705 to 386213 11686 mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386428 to 389154 11687

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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382,739 - -1.0
383,029 + -2.4
383,161 - -0.0
383,190 + -0.1
383,311 - -3.7
383,460 - -0.0
383,467 + -1.9
383,471 - -1.9
383,471 + -0.6
383,476 - -3.8
383,483 + -4.3
383,484 - 1.4
383,487 - -0.6
383,490 + 0.9
383,498 + -1.4
383,510 - -1.6
383,522 + -1.2
383,574 + -2.6
383,672 + -1.2
383,679 + -1.4
383,688 - -0.0
383,701 - 0.3
383,743 + 0.0
383,778 + 0.3
383,815 - -2.2
383,836 + 0.1
383,972 - 11686 mRNA_3318 0.11 -1.9
383,998 - 11686 mRNA_3318 0.12 -2.0
384,166 + 11686 mRNA_3318 0.18 -2.8
384,410 - 11686 mRNA_3318 0.28 0.1
384,739 + 11686 mRNA_3318 0.41 0.6
385,136 + 11686 mRNA_3318 0.57 -3.0
385,153 - 11686 mRNA_3318 0.58 -1.2
385,291 + 11686 mRNA_3318 0.63 -0.6
385,341 + 11686 mRNA_3318 0.65 -1.8
385,545 - 11686 mRNA_3318 0.73 -3.4
385,615 + 11686 mRNA_3318 0.76 -3.3
385,755 + 11686 mRNA_3318 0.82 0.0
385,932 - 11686 mRNA_3318 0.89 -2.6
385,997 + -2.6
386,084 + -0.6
386,446 + -2.5
386,461 + -1.7
386,477 - -2.3
387,070 + 11687 mRNA_3319 0.24 -1.7
387,091 + 11687 mRNA_3319 0.24 -1.0
387,183 - 11687 mRNA_3319 0.28 0.4
387,186 + 11687 mRNA_3319 0.28 -1.6