Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3315

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372360 to 374414 11682 mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375335 to 379207 11683 mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379574 to 381154 11684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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374,498 - -1.7
374,511 - -1.1
374,515 - -2.0
374,653 - -0.8
374,659 - -0.3
374,716 - -2.9
374,739 + -2.9
374,782 + 0.5
374,801 + -0.1
374,808 - -1.6
374,825 - -1.1
374,828 - -0.8
374,845 - -4.3
374,851 + 0.1
374,851 + -0.9
374,891 - -2.8
374,983 + -1.8
375,146 + -0.3
375,259 - -1.6
375,259 - -0.1
375,476 + -2.0
375,919 - 11683 mRNA_3315 0.15 -1.2
376,418 - 11683 mRNA_3315 0.28 -0.3
376,458 - 11683 mRNA_3315 0.29 -1.6
376,628 + 11683 mRNA_3315 0.33 -2.3
377,330 + 11683 mRNA_3315 0.52 -0.7
377,898 - 11683 mRNA_3315 0.66 -0.4
377,946 + 11683 mRNA_3315 0.67 0.2
378,090 + 11683 mRNA_3315 0.71 -1.8
378,388 - 11683 mRNA_3315 0.79 0.1
378,456 + 11683 mRNA_3315 0.81 -1.7
378,924 - 0.1
379,125 - 0.3
379,190 + -1.6
379,207 + -2.3
379,230 - -4.4
379,334 - -0.3
379,361 - -0.8
379,366 - -0.7
379,371 - 0.5
379,375 + 0.2
379,487 - -0.8
379,511 - -1.0
379,512 + -1.7
379,524 + -0.6
379,529 - -2.6
379,536 - 0.3
379,712 + -2.2
379,827 + 11684 mRNA_3316 0.16 -2.2
379,828 - 11684 mRNA_3316 0.16 0.8
379,846 - 11684 mRNA_3316 0.17 0.6
379,936 + 11684 mRNA_3316 0.23 -1.0
380,118 - 11684 mRNA_3316 0.34 -2.1