Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3300

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3299: 11667 - K19704 PTC1 protein phosphatase PTC1, at 333758 to 335633 11667 mRNA_3300: 11668 - HMMPfam-Amidohydrolase-PF13147,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 335794 to 339454 11668 mRNA_3301: 11669 - K08197 ARN MFS transporter, SIT family, siderophore-iron-H+ symporter, at 339708 to 341858 11669

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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334,844 - 11667 mRNA_3299 0.58 -2.6
334,844 + 11667 mRNA_3299 0.58 -0.3
334,894 + 11667 mRNA_3299 0.61 -1.2
335,164 - 11667 mRNA_3299 0.75 -2.9
335,184 - 11667 mRNA_3299 0.76 -1.7
335,440 + 11667 mRNA_3299 0.90 -4.6
335,458 - -2.0
335,463 - -3.2
335,607 + -3.0
335,660 - -0.9
335,759 + -1.1
335,775 + -1.1
335,923 - -3.1
335,929 - -0.5
336,044 + -2.0
336,359 + 11668 mRNA_3300 0.15 -1.1
336,359 - 11668 mRNA_3300 0.15 -2.0
336,838 - 11668 mRNA_3300 0.29 0.3
337,282 - 11668 mRNA_3300 0.41 -1.0
337,435 - 11668 mRNA_3300 0.45 -2.0
337,445 + 11668 mRNA_3300 0.45 -0.3
337,727 - 11668 mRNA_3300 0.53 -0.4
338,058 + 11668 mRNA_3300 0.62 -4.0
338,176 + 11668 mRNA_3300 0.65 -1.4
338,200 - 11668 mRNA_3300 0.66 -1.0
338,426 - 11668 mRNA_3300 0.72 -2.2
338,744 + 11668 mRNA_3300 0.81 0.2
338,907 + 11668 mRNA_3300 0.85 -1.3
339,030 - 11668 mRNA_3300 0.88 -0.6
339,037 + 11668 mRNA_3300 0.89 -1.6
339,178 - -1.6
339,189 - 0.0
339,204 + -3.9
339,208 - -2.2
339,215 + -1.3
339,331 + -2.9
339,338 + -1.7
339,350 + -2.0
339,362 + -3.4
339,416 + 0.2
339,484 - -0.7
339,513 + -0.6
339,521 - -0.3
339,533 + -0.8
339,539 - -2.3
339,550 + -3.1
339,554 + -3.1
339,557 + -1.7
339,648 + -0.9
339,649 + 1.1
339,659 - 1.3
339,670 - -1.2
339,676 + -1.3
339,872 + -0.2
339,891 - -1.0
339,909 + -0.9
339,927 + 11669 mRNA_3301 0.10 0.3
339,956 - 11669 mRNA_3301 0.12 -0.3
339,971 - 11669 mRNA_3301 0.12 -2.0
340,046 - 11669 mRNA_3301 0.16 -0.0
340,096 + 11669 mRNA_3301 0.18 -1.8
340,215 - 11669 mRNA_3301 0.24 -1.5
340,350 + 11669 mRNA_3301 0.30 -2.0