Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3295

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319706 to 321575 11662 mRNA_3295: 11663 - K14324 SAP18 histone deacetylase complex subunit SAP18, at 321683 to 322724 11663 mRNA_3296: 11664 - Interpro PPR repeat family, at 323054 to 326094 11664

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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321,612 - -3.7
321,616 + -2.6
321,623 + -0.2
321,626 - -1.2
321,632 - -0.9
321,636 + -2.5
321,647 + -0.7
321,659 + -0.7
321,767 + -1.4
321,782 + -1.2
321,800 + 11663 mRNA_3295 0.11 -2.1
321,801 + 11663 mRNA_3295 0.11 -1.1
321,801 + 11663 mRNA_3295 0.11 -1.8
321,816 + 11663 mRNA_3295 0.13 -2.0
321,818 - 11663 mRNA_3295 0.13 -1.3
321,906 - 11663 mRNA_3295 0.21 -1.4
322,208 - 11663 mRNA_3295 0.50 0.1
322,360 - 11663 mRNA_3295 0.65 -0.0
322,799 + -0.0
322,937 - -0.6
322,949 - -3.0
323,106 + 0.6
323,113 + -0.6