Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3293

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318203 to 319692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319706 to 321575 11662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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317,285 - -2.1
317,319 + -1.9
317,331 + -1.4
317,418 - -0.8
317,488 + -2.2
317,492 - -1.1
317,788 + -1.0
317,890 + -3.5
317,931 - -0.3
317,946 - -1.5
317,954 - -1.6
318,113 + -2.3
318,128 + -1.6
318,137 - -0.4
318,148 + -3.6
318,234 - -2.1
318,248 - -2.8
318,249 + -1.8
318,255 + -1.0
318,257 - -1.2
318,257 + -1.1
318,271 - -0.2
318,272 + -2.7
318,277 + -0.4
318,417 - 11661 mRNA_3293 0.14 -2.4
318,425 + 11661 mRNA_3293 0.15 0.1
318,431 + 11661 mRNA_3293 0.15 -4.3
318,435 + 11661 mRNA_3293 0.16 -0.3
318,451 + 11661 mRNA_3293 0.17 -1.1
318,454 + 11661 mRNA_3293 0.17 -2.8
318,574 - 11661 mRNA_3293 0.25 -0.7
318,577 - 11661 mRNA_3293 0.25 -0.4
318,690 - 11661 mRNA_3293 0.33 -1.6
318,773 + 11661 mRNA_3293 0.38 -0.6
318,774 + 11661 mRNA_3293 0.38 -0.2
319,142 - 11661 mRNA_3293 0.63 -4.2
319,157 + 11661 mRNA_3293 0.64 -0.3
319,309 + 11661 mRNA_3293 0.74 -1.9
319,322 - 11661 mRNA_3293 0.75 0.1
319,333 + 11661 mRNA_3293 0.76 0.9
319,334 + 11661 mRNA_3293 0.76 -0.4
319,853 + -2.5