Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3291

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304969 to 308540 11658 mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308905 to 310428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311013 to 311790 11660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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308,350 - 0.1
308,466 + -2.1
308,761 + -0.0
308,762 - 1.1
309,046 - -1.6
309,214 + 11659 mRNA_3291 0.20 0.0
309,254 - 11659 mRNA_3291 0.23 -1.1
309,540 + 11659 mRNA_3291 0.42 1.7
309,843 + 11659 mRNA_3291 0.62 -2.3
310,115 + 11659 mRNA_3291 0.79 0.1
310,116 + 11659 mRNA_3291 0.79 -2.7
310,273 - 11659 mRNA_3291 0.90 -1.7
310,292 - -0.8
310,569 - -0.7
310,578 - -1.6
310,594 - -3.7
310,598 - -1.8
310,629 + -0.0
310,629 - -0.5
310,652 - -0.8
310,654 - -0.9
310,655 + -1.5
310,669 - -1.2
310,677 - -2.5
310,706 - -0.9
310,710 - 0.4
310,710 - -1.9
310,748 + -1.8
310,991 - -2.1
311,141 + 11660 mRNA_3292 0.16 -2.7
311,291 - 11660 mRNA_3292 0.36 -0.9
311,294 - 11660 mRNA_3292 0.36 -1.7
311,300 + 11660 mRNA_3292 0.37 -0.2
311,405 - 11660 mRNA_3292 0.50 -1.0