Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3252

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3251: 11619 - K19986 EXOC8, SEC84 exocyst complex component 8, at 214294 to 217210 11619 mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217348 to 218013 11620 mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218422 to 220105 11621

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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216,830 + 11619 mRNA_3251 0.87 0.1
216,988 - -1.2
217,130 - -0.6
217,136 - -0.5
217,155 + -3.5
217,419 - 11620 mRNA_3252 0.11 0.1
217,516 - 11620 mRNA_3252 0.25 -2.1
217,530 + 11620 mRNA_3252 0.27 -0.9
217,534 - 11620 mRNA_3252 0.28 -2.2
217,570 - 11620 mRNA_3252 0.33 1.1
217,867 - 11620 mRNA_3252 0.78 -2.9
217,869 + 11620 mRNA_3252 0.78 -0.4
217,881 + 11620 mRNA_3252 0.80 -1.1
217,939 - 11620 mRNA_3252 0.89 -1.0
218,014 + -1.4
218,017 + -0.8
218,136 - 0.4
218,164 + -2.8
218,166 + -0.9
218,183 + -2.9
218,324 - -2.3
218,330 - 0.6
218,340 + -0.0
218,344 - -0.9
218,345 - -0.6
218,346 - -2.0
218,350 + -0.9
218,359 + -1.5
218,361 + -1.0
218,363 - -2.6
218,523 + -0.2
218,661 + 11621 mRNA_3253 0.14 1.0
218,802 - 11621 mRNA_3253 0.23 -1.2
218,811 - 11621 mRNA_3253 0.23 0.1
218,821 + 11621 mRNA_3253 0.24 0.9
218,965 - 11621 mRNA_3253 0.32 -0.2
218,969 + 11621 mRNA_3253 0.32 1.1