Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3239

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184726 to 188428 11606 mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188570 to 189872 11607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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187,714 + 11606 mRNA_3238 0.81 -2.3
187,717 - 11606 mRNA_3238 0.81 -3.4
187,720 + 11606 mRNA_3238 0.81 -1.2
188,288 + -0.9
188,346 + -3.4
188,674 + -2.7
188,680 - 3.0
188,738 - 11607 mRNA_3239 0.13 0.4
188,782 + 11607 mRNA_3239 0.16 -3.0
188,789 + 11607 mRNA_3239 0.17 -2.2
188,792 - 11607 mRNA_3239 0.17 -0.8
188,985 + 11607 mRNA_3239 0.32 -3.0
189,049 - 11607 mRNA_3239 0.37 -1.0
189,207 - 11607 mRNA_3239 0.49 -0.9
189,221 - 11607 mRNA_3239 0.50 -2.2
189,348 + 11607 mRNA_3239 0.60 -2.7
189,385 - 11607 mRNA_3239 0.63 -0.3
189,537 - 11607 mRNA_3239 0.74 -2.5
189,663 - 11607 mRNA_3239 0.84 -1.5
189,800 + -0.9
189,862 - -0.7
189,953 - -0.4
190,061 + -2.0
190,075 + -2.4
190,081 + -2.8
190,236 - -2.6
190,244 + -0.5
190,248 - -1.5
190,265 + 0.9
190,433 - -1.0
190,548 - -2.5
190,596 + -2.0