Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3229

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3228: 11596 - Hypothetical Protein, at 150554 to 152280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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151,523 + 11596 mRNA_3228 0.56 -3.2
151,598 + 11596 mRNA_3228 0.60 -2.1
151,667 + 11596 mRNA_3228 0.64 -3.7
151,694 - 11596 mRNA_3228 0.66 -1.6
151,708 - 11596 mRNA_3228 0.67 -3.2
151,708 - 11596 mRNA_3228 0.67 -1.4
151,708 - 11596 mRNA_3228 0.67 1.2
151,708 + 11596 mRNA_3228 0.67 -1.0
151,709 + 11596 mRNA_3228 0.67 -0.4
151,709 - 11596 mRNA_3228 0.67 -3.4
151,709 - 11596 mRNA_3228 0.67 -0.3
151,713 + 11596 mRNA_3228 0.67 -0.7
151,765 + 11596 mRNA_3228 0.70 0.7
151,849 + 11596 mRNA_3228 0.75 -1.5
152,208 + -2.0
152,295 - 0.8
152,299 - -2.1
152,321 - -0.8
152,344 + -2.5
152,557 + -2.8
152,591 + -0.9
152,600 + -2.6
152,679 - -1.5
152,720 - 11597 mRNA_3229 0.10 -1.8
152,993 - 11597 mRNA_3229 0.24 -2.0
153,047 - 11597 mRNA_3229 0.26 -1.0
153,166 - 11597 mRNA_3229 0.32 -1.5
153,179 + 11597 mRNA_3229 0.33 -2.0
153,385 + 11597 mRNA_3229 0.43 -0.7
153,593 + 11597 mRNA_3229 0.53 -2.3
153,881 - 11597 mRNA_3229 0.68 -0.0
153,912 + 11597 mRNA_3229 0.69 -1.4
154,487 - -1.7
154,897 - -2.5
154,921 - -0.2
154,927 - -0.0
155,030 - -3.4
155,044 - 0.7
155,076 + 2.7
155,192 - -2.5
155,211 + -1.6
155,214 + 0.9
155,336 - 0.0
155,344 - -2.3
155,348 - -3.0
155,350 - -2.1
155,350 + -1.4
155,352 - -0.5
155,356 + -2.6
155,363 - -0.1
155,368 - -0.7
155,370 - -2.0
155,371 - -0.9
155,373 + 1.5
155,375 - -0.0
155,376 + -1.7
155,378 + -1.3
155,378 + -3.0
155,383 + -2.4
155,419 - 0.3