Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3228

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3227: 11595 - K12854 SNRNP200, BRR2 pre-mRNA-splicing helicase BRR2, at 143143 to 150132 11595 mRNA_3228: 11596 - Hypothetical Protein, at 150554 to 152280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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150,642 + 0.4
150,682 + -2.2
150,721 + -3.3
150,806 + 11596 mRNA_3228 0.15 -1.7
150,824 + 11596 mRNA_3228 0.16 -1.4
150,847 - 11596 mRNA_3228 0.17 -1.1
150,860 + 11596 mRNA_3228 0.18 -1.3
150,894 + 11596 mRNA_3228 0.20 -0.1
151,015 + 11596 mRNA_3228 0.27 -1.5
151,122 - 11596 mRNA_3228 0.33 -0.7
151,233 + 11596 mRNA_3228 0.39 -1.0
151,280 - 11596 mRNA_3228 0.42 -3.3
151,308 + 11596 mRNA_3228 0.44 -2.5
151,337 - 11596 mRNA_3228 0.45 -0.1
151,344 + 11596 mRNA_3228 0.46 -0.7
151,523 + 11596 mRNA_3228 0.56 -3.2
151,598 + 11596 mRNA_3228 0.60 -2.1
151,667 + 11596 mRNA_3228 0.64 -3.7
151,694 - 11596 mRNA_3228 0.66 -1.6
151,708 - 11596 mRNA_3228 0.67 -3.2
151,708 - 11596 mRNA_3228 0.67 -1.4
151,708 - 11596 mRNA_3228 0.67 1.2
151,708 + 11596 mRNA_3228 0.67 -1.0
151,709 + 11596 mRNA_3228 0.67 -0.4
151,709 - 11596 mRNA_3228 0.67 -3.4
151,709 - 11596 mRNA_3228 0.67 -0.3
151,713 + 11596 mRNA_3228 0.67 -0.7
151,765 + 11596 mRNA_3228 0.70 0.7
151,849 + 11596 mRNA_3228 0.75 -1.5
152,208 + -2.0
152,295 - 0.8
152,299 - -2.1
152,321 - -0.8
152,344 + -2.5
152,557 + -2.8
152,591 + -0.9
152,600 + -2.6
152,679 - -1.5
152,720 - 11597 mRNA_3229 0.10 -1.8
152,993 - 11597 mRNA_3229 0.24 -2.0
153,047 - 11597 mRNA_3229 0.26 -1.0
153,166 - 11597 mRNA_3229 0.32 -1.5
153,179 + 11597 mRNA_3229 0.33 -2.0