Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3211

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3210: 11578 - K03512 POLL DNA polymerase lambda, at 98514 to 102281 11578 mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102441 to 104131 11579 mRNA_3212: 11580 - BLAST related to TRX2-thioredoxin II [Melanopsichium pennsy..., at 104334 to 106276 11580

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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101,855 - 11578 mRNA_3210 0.89 1.7
101,872 - 11578 mRNA_3210 0.89 -2.9
101,898 + 11578 mRNA_3210 0.90 -1.8
101,944 + -1.0
101,955 + -2.8
102,116 + -1.2
102,222 - -1.7
102,225 + -2.9
102,373 - -1.7
102,389 + -0.7
102,488 + -2.1
102,538 + -0.5
102,706 + 11579 mRNA_3211 0.16 -1.7
102,709 - 11579 mRNA_3211 0.16 0.3
102,825 + 11579 mRNA_3211 0.23 -0.5
102,957 + 11579 mRNA_3211 0.31 -1.6
103,001 + 11579 mRNA_3211 0.33 -4.3
103,134 - 11579 mRNA_3211 0.41 -1.2
103,218 - 11579 mRNA_3211 0.46 -0.1
103,239 - 11579 mRNA_3211 0.47 0.0
103,251 - 11579 mRNA_3211 0.48 -0.0
103,392 - 11579 mRNA_3211 0.56 -1.9
103,400 - 11579 mRNA_3211 0.57 -2.1
103,419 + 11579 mRNA_3211 0.58 -3.8
103,442 - 11579 mRNA_3211 0.59 -2.1
103,513 - 11579 mRNA_3211 0.63 -0.2
103,741 - 11579 mRNA_3211 0.77 -0.7
104,031 + -2.1
104,133 - -1.1
104,271 + -0.4
104,442 + -1.1
104,725 + 11580 mRNA_3212 0.20 -1.7
104,820 + 11580 mRNA_3212 0.25 -0.6
104,892 - 11580 mRNA_3212 0.29 -2.7
105,013 + 11580 mRNA_3212 0.35 -1.2
105,021 - 11580 mRNA_3212 0.35 0.3