Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3206

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3205: 11573 - K13281 uvsE, UVE1 UV DNA damage endonuclease, at 83287 to 85713 11573 mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85934 to 91274 11574 mRNA_3207: 11575 - Hypothetical Protein, at 91562 to 92218 11575

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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84,998 + 11573 mRNA_3205 0.70 -2.3
85,132 + 11573 mRNA_3205 0.76 -0.9
85,239 - 11573 mRNA_3205 0.80 -0.5
85,551 - -1.4
85,556 + -2.7
85,563 - -3.2
85,597 + -2.2
85,610 - -0.5
85,638 - 0.4
85,704 + -3.6
85,706 - -1.2
85,742 + 0.1
85,757 + -1.1
85,766 - -0.7
85,777 + 0.4
85,782 - 1.4
85,789 + -1.3
85,823 + -0.7
85,841 + -3.5
85,927 - -3.7
86,090 - -0.1
86,105 - -1.9
86,154 - -1.6
86,235 + 0.0
86,535 + 11574 mRNA_3206 0.11 -2.8
86,685 + 11574 mRNA_3206 0.14 -2.6
86,690 - 11574 mRNA_3206 0.14 -0.1
86,927 - 11574 mRNA_3206 0.19 -1.9
87,158 + 11574 mRNA_3206 0.23 -1.9
87,245 + 11574 mRNA_3206 0.25 -2.6
87,397 - 11574 mRNA_3206 0.27 -1.5
87,399 + 11574 mRNA_3206 0.27 -1.2
87,412 - 11574 mRNA_3206 0.28 -1.0
87,506 - 11574 mRNA_3206 0.29 -1.6
87,524 - 11574 mRNA_3206 0.30 -2.3
87,565 - 11574 mRNA_3206 0.31 -0.8
87,582 + 11574 mRNA_3206 0.31 -3.2
87,661 - 11574 mRNA_3206 0.32 -0.9
87,690 + 11574 mRNA_3206 0.33 -0.7
87,978 + 11574 mRNA_3206 0.38 -2.0
88,085 - 11574 mRNA_3206 0.40 -2.9
88,370 - 11574 mRNA_3206 0.46 -2.0
88,612 + 11574 mRNA_3206 0.50 1.4
88,694 - 11574 mRNA_3206 0.52 -1.2
88,872 - 11574 mRNA_3206 0.55 -2.5
89,269 + 11574 mRNA_3206 0.62 -0.0
89,431 + 11574 mRNA_3206 0.65 -1.2
89,635 + 11574 mRNA_3206 0.69 -3.4
89,729 - 11574 mRNA_3206 0.71 -0.6
89,960 - 11574 mRNA_3206 0.75 -2.4
90,000 + 11574 mRNA_3206 0.76 -0.5
90,017 + 11574 mRNA_3206 0.76 0.9
90,152 + 11574 mRNA_3206 0.79 -1.0
90,309 - 11574 mRNA_3206 0.82 -3.4
90,437 - 11574 mRNA_3206 0.84 -1.2
90,557 + 11574 mRNA_3206 0.87 -1.0
90,992 - -0.4
90,993 - 0.5
91,001 + 0.1
91,002 - -1.3
91,025 + -1.3
91,043 - -1.9
91,158 + -1.6
91,165 + -0.7
91,175 + -2.2
91,184 + -2.0
91,201 - 0.2
91,266 - -2.4
91,319 + -2.1
91,326 - 0.1
91,444 - -1.9
91,464 - -1.5
91,516 + -1.7
91,572 + -1.7
91,585 - 0.8
91,599 - -0.4
91,631 - 11575 mRNA_3207 0.11 0.7
91,636 + 11575 mRNA_3207 0.11 -0.3
91,647 + 11575 mRNA_3207 0.13 -0.5
91,658 + 11575 mRNA_3207 0.15 -3.7
91,660 + 11575 mRNA_3207 0.15 -1.8
91,670 + 11575 mRNA_3207 0.16 -0.6
91,772 - 11575 mRNA_3207 0.32 0.6
91,782 - 11575 mRNA_3207 0.33 -4.2
91,793 - 11575 mRNA_3207 0.35 -2.1
91,943 + 11575 mRNA_3207 0.58 -2.8
92,069 - 11575 mRNA_3207 0.77 0.1
92,227 - -2.2
92,235 + -2.1