Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3200

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71378 to 73355 11567 mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73993 to 76977 11568 mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77177 to 79098 11569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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73,619 + -0.0
73,622 - -2.3
73,623 + -2.5
73,624 + -2.3
73,625 - -2.2
73,641 + -3.6
73,645 + -1.1
73,645 - -3.5
73,646 + -0.4
73,649 - -1.2
73,660 + -2.0
73,667 + -4.3
73,669 - -2.2
73,780 - 1.3
73,783 - -1.2
73,788 + -0.6
73,808 - -1.1
73,813 - -0.0
73,825 + -0.4
73,845 + -0.8
73,950 + -3.3
73,950 + -0.4
73,969 + -1.8
73,974 - 0.8
74,713 - 11568 mRNA_3200 0.24 -1.1
75,424 + 11568 mRNA_3200 0.48 -3.3
75,554 + 11568 mRNA_3200 0.52 -1.6
75,623 + 11568 mRNA_3200 0.55 -1.7
75,728 + 11568 mRNA_3200 0.58 -1.1
75,751 - 11568 mRNA_3200 0.59 -1.2
75,880 + 11568 mRNA_3200 0.63 -2.6
75,927 + 11568 mRNA_3200 0.65 -1.4
76,071 - 11568 mRNA_3200 0.70 -0.1
76,082 + 11568 mRNA_3200 0.70 -2.3
76,167 - 11568 mRNA_3200 0.73 -1.5
76,341 - 11568 mRNA_3200 0.79 -2.3
76,346 - 11568 mRNA_3200 0.79 -1.9
76,397 + 11568 mRNA_3200 0.81 0.2
76,460 - 11568 mRNA_3200 0.83 -1.7
76,649 + 11568 mRNA_3200 0.89 -2.1
76,954 - -3.3
76,966 - -4.9
76,976 + -3.0
76,992 - 1.1
76,992 - -1.9
76,992 - 0.4
76,999 + 1.0
77,084 - 0.9
77,240 - -1.3
77,250 - -2.7
77,369 - -0.9
77,380 + 11569 mRNA_3201 0.11 1.5
77,649 - 11569 mRNA_3201 0.25 -1.6
77,832 + 11569 mRNA_3201 0.34 -0.6
77,883 + 11569 mRNA_3201 0.37 -0.8