Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3198

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64392 to 66116 11565 mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66778 to 71121 11566 mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71378 to 73355 11567

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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65,906 - 11565 mRNA_3197 0.88 -3.3
65,930 - 11565 mRNA_3197 0.89 -1.8
65,939 + 11565 mRNA_3197 0.90 -0.0
66,088 + -1.3
66,202 - -3.3
66,216 - 0.9
66,268 - -1.5
66,351 + -1.2
66,632 - -0.7
66,665 + -1.1
66,697 - -1.5
66,927 - 0.4
67,276 + 11566 mRNA_3198 0.11 -1.2
67,498 - 11566 mRNA_3198 0.17 -0.7
68,023 - 11566 mRNA_3198 0.29 -2.8
68,162 - 11566 mRNA_3198 0.32 -2.0
68,279 - 11566 mRNA_3198 0.35 -2.5
68,727 - 11566 mRNA_3198 0.45 -0.2
68,743 + 11566 mRNA_3198 0.45 -0.3
69,174 + 11566 mRNA_3198 0.55 -0.0
69,202 - 11566 mRNA_3198 0.56 -2.3
69,322 - 11566 mRNA_3198 0.59 0.2
69,421 + 11566 mRNA_3198 0.61 -0.4
69,504 - 11566 mRNA_3198 0.63 -1.6
69,574 - 11566 mRNA_3198 0.64 -2.0
69,594 - 11566 mRNA_3198 0.65 -0.7
69,776 + 11566 mRNA_3198 0.69 -1.7
70,013 - 11566 mRNA_3198 0.74 -2.1
70,171 - 11566 mRNA_3198 0.78 -0.8
70,264 - 11566 mRNA_3198 0.80 1.5
70,367 - 11566 mRNA_3198 0.83 -2.9
70,376 + 11566 mRNA_3198 0.83 -3.3
70,525 + 11566 mRNA_3198 0.86 -1.9
70,914 - -1.0
71,017 + 2.7
71,225 - -1.0
71,238 + -0.0
71,439 - -1.9