Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3197

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3196: 11564 - Hypothetical Protein, at 62107 to 63896 11564 mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64392 to 66116 11565 mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66778 to 71121 11566

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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63,395 - 11564 mRNA_3196 0.72 -0.5
63,417 + 11564 mRNA_3196 0.73 0.2
63,428 + 11564 mRNA_3196 0.74 0.6
63,435 - 11564 mRNA_3196 0.74 -2.7
63,974 - -1.6
63,975 - -2.3
63,982 - 0.2
63,983 + 0.6
64,042 - -2.0
64,044 - -1.8
64,116 - 1.2
64,118 - -0.7
64,124 + -0.2
64,172 + -0.0
64,178 - 0.1
64,184 - 0.9
64,304 + -0.9
64,312 + -2.6
64,316 - -2.3
64,322 + -2.4
64,330 + -0.7
64,449 - -2.0
64,462 - -0.8
64,473 + -2.6
64,728 + 11565 mRNA_3197 0.19 -1.7
64,742 + 11565 mRNA_3197 0.20 -0.9
65,054 - 11565 mRNA_3197 0.38 -0.4
65,168 + 11565 mRNA_3197 0.45 -1.0
65,365 + 11565 mRNA_3197 0.56 -3.8
65,499 - 11565 mRNA_3197 0.64 -2.8
65,906 - 11565 mRNA_3197 0.88 -3.3
65,930 - 11565 mRNA_3197 0.89 -1.8
65,939 + 11565 mRNA_3197 0.90 -0.0
66,088 + -1.3
66,202 - -3.3
66,216 - 0.9
66,268 - -1.5
66,351 + -1.2
66,632 - -0.7
66,665 + -1.1
66,697 - -1.5
66,927 - 0.4