Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3196

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3195: 11563 - Hypothetical Protein, at 60623 to 61680 11563 mRNA_3196: 11564 - Hypothetical Protein, at 62107 to 63896 11564 mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64392 to 66116 11565

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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61,206 + 11563 mRNA_3195 0.55 -0.0
61,392 - 11563 mRNA_3195 0.73 -0.7
61,512 - 11563 mRNA_3195 0.84 -0.6
61,627 + -2.5
61,676 + -0.6
61,684 + -2.4
61,707 + -1.7
61,710 - -2.0
61,786 - -1.0
61,796 + 1.8
61,796 - -0.9
61,807 + 0.6
61,825 + -2.6
61,835 - -0.1
61,932 - -0.9
61,958 + -1.5
62,347 - 11564 mRNA_3196 0.13 -2.7
62,404 - 11564 mRNA_3196 0.17 0.2
62,497 - 11564 mRNA_3196 0.22 -2.5
62,505 + 11564 mRNA_3196 0.22 -2.0
62,597 + 11564 mRNA_3196 0.27 -0.2
62,787 - 11564 mRNA_3196 0.38 1.3
62,803 + 11564 mRNA_3196 0.39 -1.8
63,067 + 11564 mRNA_3196 0.54 -3.6
63,395 - 11564 mRNA_3196 0.72 -0.5
63,417 + 11564 mRNA_3196 0.73 0.2
63,428 + 11564 mRNA_3196 0.74 0.6
63,435 - 11564 mRNA_3196 0.74 -2.7
63,974 - -1.6
63,975 - -2.3
63,982 - 0.2
63,983 + 0.6
64,042 - -2.0
64,044 - -1.8
64,116 - 1.2
64,118 - -0.7
64,124 + -0.2
64,172 + -0.0
64,178 - 0.1
64,184 - 0.9
64,304 + -0.9
64,312 + -2.6
64,316 - -2.3
64,322 + -2.4
64,330 + -0.7
64,449 - -2.0
64,462 - -0.8
64,473 + -2.6
64,728 + 11565 mRNA_3197 0.19 -1.7
64,742 + 11565 mRNA_3197 0.20 -0.9