Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3191

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47974 to 50099 11558 mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50210 to 52668 11559 mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53069 to 53726 11560

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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49,405 - 11558 mRNA_3190 0.67 -1.9
49,406 + 11558 mRNA_3190 0.67 -3.3
49,526 - 11558 mRNA_3190 0.73 -1.4
49,655 - 11558 mRNA_3190 0.79 -1.3
49,684 - 11558 mRNA_3190 0.80 -2.3
50,015 + -0.5
50,022 + -2.1
50,113 + -1.9
50,280 - -1.2
50,327 + -0.7
50,337 + -1.3
50,491 + 11559 mRNA_3191 0.11 -1.4
50,505 + 11559 mRNA_3191 0.12 -0.6
50,598 + 11559 mRNA_3191 0.16 -0.8
50,645 - 11559 mRNA_3191 0.18 -1.2
50,826 - 11559 mRNA_3191 0.25 -2.2
50,918 - 11559 mRNA_3191 0.29 -1.2
51,048 - 11559 mRNA_3191 0.34 -0.7
51,138 + 11559 mRNA_3191 0.38 -2.5
51,175 - 11559 mRNA_3191 0.39 -2.8
51,191 + 11559 mRNA_3191 0.40 -1.8
51,230 + 11559 mRNA_3191 0.41 -0.5
51,679 + 11559 mRNA_3191 0.60 -0.1
51,894 + 11559 mRNA_3191 0.68 -0.3
51,943 + 11559 mRNA_3191 0.70 -1.5
51,960 + 11559 mRNA_3191 0.71 -2.5
51,967 - 11559 mRNA_3191 0.71 -2.5
52,054 - 11559 mRNA_3191 0.75 -1.6
52,183 - 11559 mRNA_3191 0.80 -2.5
52,183 + 11559 mRNA_3191 0.80 -1.6
52,315 - 11559 mRNA_3191 0.86 0.2
52,566 + -0.8
52,631 + -1.9
52,894 + -0.5
52,922 - 0.0
53,157 + 11560 mRNA_3192 0.13 -1.8
53,366 + 11560 mRNA_3192 0.45 -2.1
53,508 + 11560 mRNA_3192 0.67 -2.0
53,523 + 11560 mRNA_3192 0.69 -1.2
53,635 - 11560 mRNA_3192 0.86 -0.5