Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3177

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17776 to 21807 11544 mRNA_3177: 11545 - KOG2164 Predicted E3 ubiquitin ligase, at 22085 to 24622 11545 mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25091 to 26696 11546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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21,929 + -0.2
21,953 - -0.5
21,975 + -1.8
21,994 + -0.4
22,079 - -2.3
22,136 + -1.5
22,142 + -1.2
22,231 - -0.1
22,496 - 11545 mRNA_3177 0.16 -1.2
22,573 + 11545 mRNA_3177 0.19 -1.1
22,583 - 11545 mRNA_3177 0.20 0.1
22,589 - 11545 mRNA_3177 0.20 0.7
22,737 + 11545 mRNA_3177 0.26 -3.0
22,986 - 11545 mRNA_3177 0.36 -0.0
22,996 + 11545 mRNA_3177 0.36 -0.9
23,165 - 11545 mRNA_3177 0.43 -1.6
23,429 + 11545 mRNA_3177 0.53 -1.8
23,519 - 11545 mRNA_3177 0.57 -2.1
23,581 + 11545 mRNA_3177 0.59 -1.8
23,673 - 11545 mRNA_3177 0.63 -2.1
23,690 + 11545 mRNA_3177 0.63 -1.0
23,999 - 11545 mRNA_3177 0.75 -3.0
24,006 + 11545 mRNA_3177 0.76 1.1
24,234 - 11545 mRNA_3177 0.85 -0.5
24,650 + -0.6
24,736 + -0.8
24,877 + 0.1
25,088 + -1.6
25,294 + 11546 mRNA_3178 0.13 -2.5
25,308 + 11546 mRNA_3178 0.14 -2.2
25,401 - 11546 mRNA_3178 0.19 1.6
25,575 + 11546 mRNA_3178 0.30 -3.3