Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3175

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10754 to 11960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12407 to 17406 11543 mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17776 to 21807 11544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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11,991 + -3.9
12,077 + -2.2
12,411 + 0.1
12,584 + -3.4
12,995 + 11543 mRNA_3175 0.12 -0.1
13,364 - 11543 mRNA_3175 0.19 -2.8
13,388 - 11543 mRNA_3175 0.20 0.8
13,408 + 11543 mRNA_3175 0.20 -1.8
13,424 + 11543 mRNA_3175 0.20 -1.3
13,509 - 11543 mRNA_3175 0.22 0.1
13,543 + 11543 mRNA_3175 0.23 1.7
13,605 + 11543 mRNA_3175 0.24 0.1
13,714 - 11543 mRNA_3175 0.26 -0.3
13,818 + 11543 mRNA_3175 0.28 0.0
13,845 - 11543 mRNA_3175 0.29 -0.3
14,006 - 11543 mRNA_3175 0.32 0.2
14,112 + 11543 mRNA_3175 0.34 -1.0
14,133 + 11543 mRNA_3175 0.35 -0.9
14,250 - 11543 mRNA_3175 0.37 -0.4
14,270 - 11543 mRNA_3175 0.37 -2.8
14,290 + 11543 mRNA_3175 0.38 -1.6
14,290 + 11543 mRNA_3175 0.38 -1.2
14,292 - 11543 mRNA_3175 0.38 -1.6
14,387 - 11543 mRNA_3175 0.40 -3.2
14,397 - 11543 mRNA_3175 0.40 -1.6
14,425 - 11543 mRNA_3175 0.40 -1.2
14,599 + 11543 mRNA_3175 0.44 -1.6
14,713 - 11543 mRNA_3175 0.46 -1.8
14,956 + 11543 mRNA_3175 0.51 -0.0
15,195 - 11543 mRNA_3175 0.56 -1.1
15,196 + 11543 mRNA_3175 0.56 -2.3
15,249 + 11543 mRNA_3175 0.57 -0.8
15,288 - 11543 mRNA_3175 0.58 -0.2
15,289 + 11543 mRNA_3175 0.58 -0.5
15,548 - 11543 mRNA_3175 0.63 0.2
15,560 + 11543 mRNA_3175 0.63 0.0
15,848 + 11543 mRNA_3175 0.69 0.5
16,181 + 11543 mRNA_3175 0.75 -1.3
16,270 - 11543 mRNA_3175 0.77 -0.1
16,290 + 11543 mRNA_3175 0.78 -0.6
16,379 - 11543 mRNA_3175 0.79 -0.9
16,389 + 11543 mRNA_3175 0.80 -1.8
16,414 + 11543 mRNA_3175 0.80 -0.3
16,869 - 11543 mRNA_3175 0.89 -0.9
17,120 - -1.5
17,136 - 0.4
17,151 - -1.0
17,239 + 1.2
17,276 - 0.1
17,290 - -2.9
17,299 + -1.3
17,310 + -0.6
17,316 - -1.8
17,445 - -1.6
17,463 + -0.2
17,479 + -1.1
17,581 - -2.6
17,605 - -4.3
17,607 - -1.3
17,616 + -1.0
17,631 - -1.1
17,712 - -0.6
17,739 - -2.3
17,742 - -2.2
17,772 - -0.4