Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3171

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539 mRNA_3172: 11540 - Hypothetical Protein, at 6329 to 7697 11540

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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3,407 - -0.4
3,547 - -2.2
3,604 + 3.0
3,607 + -0.4
3,739 - -1.2
3,768 + 0.2
4,061 + -0.9
4,136 - -0.2
4,162 + 0.5
4,176 + -1.0
4,323 - 11539 mRNA_3171 0.14 -1.5
4,361 + 11539 mRNA_3171 0.16 0.4
4,776 + 11539 mRNA_3171 0.41 -2.3
4,865 + 11539 mRNA_3171 0.46 -1.1
4,880 + 11539 mRNA_3171 0.47 -1.8
5,068 + 11539 mRNA_3171 0.58 -2.2
5,216 + 11539 mRNA_3171 0.67 0.4
5,224 - 11539 mRNA_3171 0.68 -1.1
5,341 - 11539 mRNA_3171 0.75 -2.2
5,477 + 11539 mRNA_3171 0.83 -1.0
5,496 - 11539 mRNA_3171 0.84 -2.6
5,503 + 11539 mRNA_3171 0.84 1.7
5,510 + 11539 mRNA_3171 0.85 -0.9
5,514 + 11539 mRNA_3171 0.85 -0.6
5,600 + -0.9
5,646 - -2.8
5,663 - -1.0
5,664 + -0.6
5,769 + -3.2
5,779 - -0.5
5,781 + -0.2
5,795 - -1.2
5,801 - -0.1
5,801 + 0.0
5,803 - -0.1
5,822 - -1.6
5,824 + -1.5
5,828 - -3.0
5,835 - 0.1
5,836 - -1.6
5,836 + -1.1
5,841 - -1.9
5,842 + -1.4
5,852 - -1.5
5,868 - -3.2
5,971 + -1.4
5,974 + -0.4
5,974 - -1.2
5,978 + -3.2
5,979 - -0.8
5,981 + -1.2
5,983 + -0.3
5,984 + 0.5
5,989 - -1.2
5,991 + 0.1
6,000 + -0.9
6,001 + 0.2
6,002 - -0.3
6,008 + 0.2
6,040 - -2.1
6,068 + -1.8
6,084 + 1.1
6,084 - -0.9
6,089 + 0.1
6,094 - -1.3
6,095 - -1.0
6,096 + -0.7
6,097 + -1.9
6,099 - 0.3
6,100 + -1.1
6,110 - -2.0
6,150 + -0.8
6,153 - -1.2
6,167 + -0.6
6,180 + -0.2
6,186 - -2.7
6,194 + -1.2
6,204 + 1.3
6,230 + -1.6
6,252 - -1.0
6,310 - 0.2
6,311 - 0.0
6,321 - -3.1
6,323 + -1.5
6,327 + -0.4
6,328 - -0.6
6,330 - 0.8
6,332 - 0.2
6,333 + 0.0
6,333 + -3.2
6,334 - -1.0
6,343 + 0.1
6,347 - -2.8
6,348 + 0.2
6,349 + -1.0
6,349 - -3.3
6,353 + -1.7
6,362 - -2.7
6,364 + 0.5
6,368 + -1.0
6,369 + -1.1
6,370 + -0.2
6,372 + -2.3
6,376 - 0.6
6,387 + -2.3
6,390 - -1.8
6,392 + -2.5
6,403 + -0.3
6,408 + -1.9
6,410 + -3.0
6,419 + -1.4
6,466 + 11540 mRNA_3172 0.10 -1.2
6,471 + 11540 mRNA_3172 0.10 -1.9
6,501 + 11540 mRNA_3172 0.13 -1.3
6,512 + 11540 mRNA_3172 0.13 -2.6
6,520 + 11540 mRNA_3172 0.14 0.1
6,556 - 11540 mRNA_3172 0.17 -0.9
6,563 + 11540 mRNA_3172 0.17 -1.1
6,570 + 11540 mRNA_3172 0.18 -1.6
6,577 + 11540 mRNA_3172 0.18 -1.7
6,580 + 11540 mRNA_3172 0.18 -1.4
6,652 - 11540 mRNA_3172 0.24 -0.2
6,680 + 11540 mRNA_3172 0.26 -0.2
6,730 - 11540 mRNA_3172 0.29 -0.5
6,750 - 11540 mRNA_3172 0.31 -0.7