Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,174 - 11537 mRNA_3169 0.65 -0.9
1,174 + 11537 mRNA_3169 0.65 -2.5
1,259 + 11537 mRNA_3169 0.73 -1.5
1,265 + 11537 mRNA_3169 0.74 0.1
1,268 + 11537 mRNA_3169 0.74 -0.4
1,269 - 11537 mRNA_3169 0.74 0.4
1,288 - 11537 mRNA_3169 0.76 -1.4
1,297 + 11537 mRNA_3169 0.77 -2.2
1,303 - 11537 mRNA_3169 0.78 -0.4
1,399 + 11537 mRNA_3169 0.87 -2.6
1,412 - 11537 mRNA_3169 0.88 -1.6
1,419 - 11537 mRNA_3169 0.89 -0.9
1,423 - 11537 mRNA_3169 0.90 -2.4
1,429 - -1.9
1,453 + -2.8
1,459 + -1.8
1,459 + -0.2
1,460 - -2.3
1,461 + -0.7
1,462 + -3.3
1,467 + -2.6
1,470 - -1.0
1,474 - -0.6
1,485 + -0.6
1,520 + -1.0
1,523 + -2.5
1,531 - 0.3
1,537 + -0.5
1,541 + -0.5
1,562 + -3.5
1,567 + -0.9
1,572 + -1.4
1,582 - -0.9
1,584 - -1.9
1,589 + -2.5
1,596 - -1.2
1,601 - -1.2
1,602 + -4.2
1,605 + -1.1
1,609 + -1.9
1,616 + -1.1
1,636 + -0.4
1,654 + -2.1
1,656 - -0.9
1,666 + -0.6
1,675 - 0.8
1,682 - -2.0
1,697 - 0.0
1,709 + -2.2
1,709 - -1.9
1,711 + -1.8
1,718 - -2.0
1,719 + -1.3
1,722 - -0.2
1,723 + -0.9
1,725 - -2.8
1,725 - -1.0
1,727 + -2.6
1,730 + -0.4
1,731 + 1.2
1,732 + -3.7
1,732 + -3.3
1,734 + 0.3
1,734 + -0.4
1,734 + -0.0
1,739 - -3.3
1,740 + -0.1
1,744 - -3.1
1,747 + -3.3
1,749 + -1.2
1,759 + -1.0
1,759 + -0.0
1,759 + -1.3
1,761 + -0.2
1,763 + -0.6
1,765 + -2.3
1,767 + -3.7
1,769 + 0.1
1,772 + -1.6
1,772 + -1.5
1,774 + -2.0
1,774 + 0.2
1,775 + -2.4
1,776 - 1.6
1,776 + 0.8
1,777 + -2.1
1,778 + -2.9
1,778 - -1.7
1,781 - -0.4
1,783 - 0.9
1,783 - -3.6
1,783 - -1.3
1,783 - -0.4
1,784 + -2.6
1,789 + -1.5
1,789 - -0.1
1,791 + -0.6
1,792 + -1.2
1,793 + -1.9
1,795 + -2.3
1,796 + -0.3
1,796 - -1.1
1,798 + -2.3
1,800 + -2.0
1,801 + 0.0
1,805 + -1.0
1,805 + -1.8
1,807 + -2.1
1,813 - -1.8
1,814 + -0.1
1,814 + -0.9
1,818 - -3.5
1,851 - -1.4
1,874 + -0.8
1,881 - -1.2
1,885 - -0.9
1,891 - -0.8
1,896 - -1.4
1,912 + -1.4
1,912 + 0.1
1,914 - -1.8
1,916 - -1.9
1,917 - -0.2
1,919 + -0.7
1,922 - -1.8
1,923 - -0.2
1,934 - -1.0
1,935 + 0.0
1,938 - -1.7
1,938 - -0.9
1,940 - -3.1
1,941 + -0.7
1,941 + -0.9
1,942 + -2.8
1,943 - -0.7
1,944 + -0.1
1,944 - -3.9
1,945 - -1.0
1,945 + -1.0
1,946 - 0.4
1,947 + -0.6
1,960 - -0.2
1,968 + -2.5
1,980 + -1.5
2,015 + -0.2
2,067 - -3.1
2,081 - -2.0
2,091 + 2.0
2,220 + -2.5
2,229 - -0.4
2,235 - -2.3
2,237 - 0.0
2,242 + -1.9
2,242 - -0.6
2,245 - -2.5
2,248 - -2.5
2,251 + -0.3
2,254 - -1.1
2,261 + -1.8
2,262 - -0.8
2,266 + -3.0
2,268 + -3.1
2,400 + 11538 mRNA_3170 0.21 -1.1
2,401 - 11538 mRNA_3170 0.21 -0.4
2,404 + 11538 mRNA_3170 0.22 -0.9
2,414 + 11538 mRNA_3170 0.23 -1.2
2,420 - 11538 mRNA_3170 0.23 -2.1
2,439 + 11538 mRNA_3170 0.25 -0.9
2,446 + 11538 mRNA_3170 0.26 -0.6
2,470 - 11538 mRNA_3170 0.28 -1.4
2,516 - 11538 mRNA_3170 0.32 -0.7
2,550 - 11538 mRNA_3170 0.35 -0.1
2,553 + 11538 mRNA_3170 0.36 -2.8
2,569 + 11538 mRNA_3170 0.37 -0.7
2,573 - 11538 mRNA_3170 0.38 1.0
2,581 + 11538 mRNA_3170 0.38 -2.5
2,582 + 11538 mRNA_3170 0.38 0.8
2,611 + 11538 mRNA_3170 0.41 -1.0
2,698 + 11538 mRNA_3170 0.49 -1.8
2,699 + 11538 mRNA_3170 0.49 -1.5
2,755 + 11538 mRNA_3170 0.55 -1.7
2,853 + 11538 mRNA_3170 0.64 -0.4
3,014 - 11538 mRNA_3170 0.79 -2.1
3,407 - -0.4
3,547 - -2.2
3,604 + 3.0
3,607 + -0.4
3,739 - -1.2
3,768 + 0.2
4,061 + -0.9
4,136 - -0.2
4,162 + 0.5
4,176 + -1.0