Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3157

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448077 to 450028 11524 mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450126 to 451000 11525 mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451339 to 452325 11526

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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449,150 - 11524 mRNA_3156 0.55 1.0
449,221 - 11524 mRNA_3156 0.59 -1.8
449,447 + 11524 mRNA_3156 0.70 1.3
449,481 + 11524 mRNA_3156 0.72 -2.7
449,627 - 11524 mRNA_3156 0.79 -1.6
450,031 + -2.9
450,046 + 0.5
450,320 + 11525 mRNA_3157 0.22 -0.0
450,483 + 11525 mRNA_3157 0.41 -1.5
450,606 - 11525 mRNA_3157 0.55 -1.3
450,608 - 11525 mRNA_3157 0.55 -2.3
450,614 + 11525 mRNA_3157 0.56 -1.0
450,633 + 11525 mRNA_3157 0.58 -1.3
450,768 + 11525 mRNA_3157 0.73 -2.0
450,770 + 11525 mRNA_3157 0.74 0.2
450,912 + 11525 mRNA_3157 0.90 0.1
450,986 + -0.1
451,051 - -1.9
451,058 + -0.5
451,060 - -1.6
451,063 + -0.8
451,063 + -4.7
451,064 + -1.4
451,066 + -1.5
451,069 - -0.3
451,075 + 1.0
451,082 + 0.5
451,089 - -1.5
451,091 + -1.4
451,092 + -2.3
451,092 + -2.5
451,232 + -2.8
451,234 + -0.1
451,246 - 0.2
451,382 + -2.8
451,401 + -2.3
451,523 + 11526 mRNA_3158 0.19 -2.7
451,674 + 11526 mRNA_3158 0.34 -1.4
451,679 + 11526 mRNA_3158 0.34 -2.0
451,710 + 11526 mRNA_3158 0.38 -1.8
451,820 + 11526 mRNA_3158 0.49 -2.8
451,825 + 11526 mRNA_3158 0.49 -2.6
451,839 + 11526 mRNA_3158 0.51 -0.6
451,849 + 11526 mRNA_3158 0.52 -3.4
451,953 - 11526 mRNA_3158 0.62 -3.3
451,962 + 11526 mRNA_3158 0.63 -1.9
451,963 - 11526 mRNA_3158 0.63 -0.7
451,972 - 11526 mRNA_3158 0.64 -1.1
451,973 + 11526 mRNA_3158 0.64 -0.6
451,977 - 11526 mRNA_3158 0.65 -0.9