Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3156

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443800 to 447457 11523 mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448077 to 450028 11524 mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450126 to 451000 11525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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447,082 - 11523 mRNA_3155 0.90 -3.0
447,257 - -1.5
447,543 + -0.9
447,554 - -3.9
447,555 + -2.6
447,558 + -1.2
447,679 - -2.2
447,838 + -2.5
447,846 - -2.4
447,850 - -2.2
447,854 - -2.8
448,004 + 0.2
448,019 - 0.5
448,140 + -3.1
448,146 - -0.1
448,162 + 1.8
448,165 + -1.1
448,175 + -1.3
448,230 + -0.8
448,286 - 11524 mRNA_3156 0.11 -2.4
448,303 - 11524 mRNA_3156 0.12 -2.1
448,308 - 11524 mRNA_3156 0.12 -2.0
448,436 + 11524 mRNA_3156 0.18 -1.0
448,598 - 11524 mRNA_3156 0.27 -2.4
448,604 + 11524 mRNA_3156 0.27 0.5
448,609 - 11524 mRNA_3156 0.27 -1.0
448,613 + 11524 mRNA_3156 0.27 -0.7
448,634 + 11524 mRNA_3156 0.29 -2.3
448,647 - 11524 mRNA_3156 0.29 -2.6
448,728 - 11524 mRNA_3156 0.33 -2.8
448,747 - 11524 mRNA_3156 0.34 -1.8
449,150 - 11524 mRNA_3156 0.55 1.0
449,221 - 11524 mRNA_3156 0.59 -1.8
449,447 + 11524 mRNA_3156 0.70 1.3
449,481 + 11524 mRNA_3156 0.72 -2.7
449,627 - 11524 mRNA_3156 0.79 -1.6
450,031 + -2.9
450,046 + 0.5
450,320 + 11525 mRNA_3157 0.22 -0.0
450,483 + 11525 mRNA_3157 0.41 -1.5
450,606 - 11525 mRNA_3157 0.55 -1.3
450,608 - 11525 mRNA_3157 0.55 -2.3
450,614 + 11525 mRNA_3157 0.56 -1.0
450,633 + 11525 mRNA_3157 0.58 -1.3
450,768 + 11525 mRNA_3157 0.73 -2.0
450,770 + 11525 mRNA_3157 0.74 0.2
450,912 + 11525 mRNA_3157 0.90 0.1
450,986 + -0.1