Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3153

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520 mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439382 to 440661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440957 to 442475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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438,414 - -1.1
438,426 - -0.1
438,436 - -4.4
438,446 + -3.1
438,469 - -1.6
438,471 - -1.6
438,472 + 0.1
438,478 - 0.5
438,503 + -3.3
438,542 - 0.2
438,552 + -3.2
438,560 - 1.9
438,603 - -1.0
438,612 - -0.9
438,614 - -1.6
438,629 + -3.1
438,643 + -3.5
438,645 + -2.2
438,655 - -4.1
438,662 - -0.3
438,778 - -0.5
438,784 + -1.2
438,844 - 11520 mRNA_3152 0.17 0.2
438,898 + 11520 mRNA_3152 0.32 -1.8
438,920 + 11520 mRNA_3152 0.38 1.8
438,952 - 11520 mRNA_3152 0.46 0.2
439,046 - 11520 mRNA_3152 0.72 -0.2
439,067 - 11520 mRNA_3152 0.77 -2.9
439,080 + 11520 mRNA_3152 0.81 -1.8
439,089 + 11520 mRNA_3152 0.83 1.1
439,199 - -2.3
439,200 + -2.7
439,201 - -2.0
439,202 + -0.0
439,203 - -0.1
439,203 + 0.9
439,204 + -0.8
439,344 - -1.7
439,350 + 1.0
439,485 + 1.2
439,645 + 11521 mRNA_3153 0.21 -0.1
439,674 + 11521 mRNA_3153 0.23 -1.5
439,785 - 11521 mRNA_3153 0.31 -3.7
439,787 + 11521 mRNA_3153 0.32 -1.3
439,792 - 11521 mRNA_3153 0.32 -2.3
440,096 + 11521 mRNA_3153 0.56 -2.0
440,332 - 11521 mRNA_3153 0.74 -0.8
440,340 + 11521 mRNA_3153 0.75 0.0
440,495 - 11521 mRNA_3153 0.87 -1.8
440,508 + 11521 mRNA_3153 0.88 -1.2
440,639 - -3.1
440,692 + -2.4
440,928 - -1.7
440,945 - -1.0
440,973 - -0.2
441,230 - 11522 mRNA_3154 0.18 -1.5
441,364 + 11522 mRNA_3154 0.27 -1.0
441,385 + 11522 mRNA_3154 0.28 0.2
441,487 - 11522 mRNA_3154 0.35 -0.4
441,546 - 11522 mRNA_3154 0.39 -1.3