Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3150

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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434,112 + -0.4
434,119 - -1.1
434,238 - -2.9
434,255 - -1.7
434,278 - -0.6
434,296 - -1.6
434,379 + -2.3
434,393 + -0.2
434,395 + -0.3
434,395 - -1.2
434,399 - -2.6
434,400 - -1.1
434,514 - -0.8
434,518 + -0.1
434,524 + -2.2
434,531 - 0.4
434,541 + -1.3
434,544 + -2.7
434,544 - -3.5
434,644 - 0.0
434,665 + -0.9
434,671 + -1.5
434,672 - -0.6
434,675 - -1.0
434,677 - -3.7
434,689 - 0.8
434,689 + -1.0
434,691 + -2.9
434,694 + -2.0
434,699 + 2.3
434,720 - -0.6
434,757 - -1.7
434,817 - -2.5
434,819 + -1.9
434,836 + -2.6
434,865 + -2.0
434,978 + -1.4
434,983 - 2.4
434,992 + 0.2
434,997 - -2.0
435,105 - -0.3
435,109 - -1.7
435,123 - -1.0
435,407 + 11518 mRNA_3150 0.29 0.6
435,437 + 11518 mRNA_3150 0.32 -2.1
435,442 + 11518 mRNA_3150 0.32 -1.0
435,469 + 11518 mRNA_3150 0.34 -1.3
435,484 + 11518 mRNA_3150 0.35 -2.9
435,485 + 11518 mRNA_3150 0.35 -0.7
435,564 - 11518 mRNA_3150 0.41 -1.7
435,571 + 11518 mRNA_3150 0.42 -1.0
435,684 - 11518 mRNA_3150 0.51 -0.9
435,702 + 11518 mRNA_3150 0.52 -0.0
435,718 - 11518 mRNA_3150 0.53 -0.8
435,843 - 11518 mRNA_3150 0.63 -1.0
435,865 + 11518 mRNA_3150 0.65 -0.9
435,979 - 11518 mRNA_3150 0.73 -0.9
436,001 - 11518 mRNA_3150 0.75 -0.3
436,102 - 11518 mRNA_3150 0.83 -1.4
436,241 + -0.8
436,445 + 0.3
436,643 + -0.7
436,712 - 11519 mRNA_3151 0.14 -2.4
436,734 - 11519 mRNA_3151 0.16 -0.0
436,799 + 11519 mRNA_3151 0.20 -1.4
436,895 + 11519 mRNA_3151 0.25 -2.3
436,901 + 11519 mRNA_3151 0.26 -0.8
437,009 - 11519 mRNA_3151 0.32 -2.8
437,041 + 11519 mRNA_3151 0.34 -3.0
437,214 - 11519 mRNA_3151 0.45 -1.3
437,264 + 11519 mRNA_3151 0.48 -1.3
437,296 + 11519 mRNA_3151 0.50 -1.9
437,300 + 11519 mRNA_3151 0.50 1.9
437,300 - 11519 mRNA_3151 0.50 0.3
437,303 - 11519 mRNA_3151 0.50 -3.3
437,315 - 11519 mRNA_3151 0.51 -2.6