Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3149

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429143 to 430117 11516 mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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429,926 - 11516 mRNA_3148 0.80 -1.0
430,048 + -1.6
430,050 + -2.7
430,050 + -1.6
430,054 + -1.6
430,090 - -0.9
430,179 - -1.6
430,180 - -0.7
430,181 - -2.0
430,187 + -1.9
430,191 - -2.0
430,192 + -1.1
430,196 + 2.4
430,198 + -2.4
430,208 + -0.9
430,227 + -1.1
430,227 + 1.2
430,286 - -2.0
430,302 - -1.4
430,308 - -2.2
430,309 + -3.3
430,312 - -3.0
430,317 - -3.0
430,321 - -0.9
430,330 - -2.0
430,340 - -1.9
430,382 - -2.3
430,385 + -3.0
430,393 - -0.8
430,427 - -0.8
430,433 + -1.1
430,448 + -0.3
430,454 - -1.8
430,457 + -1.3
430,458 + -2.4
430,471 - -1.7
430,472 - -0.2
430,477 - -1.0
430,478 + -1.0
430,483 + 0.8
430,484 + -0.6
430,484 + 1.0
430,485 + 0.2
430,485 + -1.0
430,486 + -2.1
430,494 - -2.9
430,494 - -1.4
430,497 + -2.0
430,497 + -0.9
430,497 + -4.0
430,500 + -1.0
430,502 + -0.7
430,526 - -2.3
430,534 - -3.6
430,542 - -0.0
430,542 - -2.7
430,543 - -2.1
430,545 - 0.2
430,545 - -1.9
430,546 + -1.5
430,546 + -0.3
430,546 - -0.4
430,553 - -1.9
430,553 - -1.0
430,553 - -2.3
430,555 - -1.5
430,555 - 0.7
430,557 - -0.7
430,557 - 0.1
430,558 + -2.7
430,558 + -0.4
430,561 + -1.2
430,562 + -2.6
430,567 - -2.2
430,569 - 0.6
430,569 + -0.1
430,569 - -1.4
430,573 - -1.5
430,573 - -0.1
430,573 - -1.7
430,575 - -4.4
430,576 + -2.2
430,577 - -1.2
430,577 + 0.5
430,578 + -2.7
430,579 + -3.3
430,584 - -1.8
430,585 - -0.6
430,587 + -1.2
430,588 + -0.4
430,588 - -3.8
430,593 - -1.7
430,594 + -1.6
430,596 - -4.6
430,596 + 0.5
430,597 + 0.3
430,601 - 0.3
430,605 + -0.8
430,605 - -1.2
430,606 + -1.8
430,606 - -1.0
430,609 - -1.8
430,615 + -0.3
430,620 + -0.2
430,622 + 0.6
430,629 - 0.2
430,638 - -1.4
430,640 - 0.9
430,644 + -2.5
430,644 - -1.9
430,645 - -0.2
430,645 + -1.7
430,646 + -0.3
430,657 - -0.4
430,658 + 1.0
430,670 - 0.3
430,685 - -2.5
430,705 + -2.5
430,707 + 1.1
430,714 - -1.6
430,717 + -2.5
430,723 - -0.6
430,729 + 1.3
430,733 - -1.0
430,741 - -0.7
430,743 - -0.4
430,745 - -0.3
430,745 - -1.0
430,745 - -2.3
430,748 - -0.6
430,748 - -1.1
430,748 - -0.7
430,752 - 0.4
430,752 - -2.3
430,769 + 0.5
430,774 + -3.1
430,794 - -2.1
430,806 - -1.8
430,813 + 0.4
430,821 + -2.4
430,826 + -0.4
430,828 + -2.7
430,830 - 0.3
430,832 - -1.2
430,835 + -1.4
430,835 + -1.8
430,836 - -0.6
430,837 + 0.5
430,838 + 0.0
430,845 - -1.0
430,846 - 0.6
430,847 + -1.8
430,849 - -1.4
430,850 + -1.1
430,852 - -3.3
430,852 - 0.8
430,853 - 0.5
430,853 - -1.7
430,857 + -0.9
430,868 - -0.4
430,871 - -1.5
430,872 - -0.7
430,872 + -1.3
430,874 - 1.2
430,874 - -1.2
430,876 + -0.3
430,876 - -0.1
430,877 + -0.6
430,877 + -1.0
430,877 - -0.5
430,881 - -0.8
430,882 + -3.2
430,884 + 1.3
430,887 + -0.1
430,894 - -2.2
430,908 - 1.8
430,909 - -1.6
430,911 - 1.3
430,921 - -1.5
430,923 - -0.5
430,924 + -0.6
430,924 + -0.4
430,928 - 0.4
430,930 - -1.8
430,937 + 0.3
430,938 + -1.6
430,940 + -1.5
430,940 + 2.9
430,941 + -1.0
430,951 + -2.5
430,956 + 0.6
430,962 - -0.7
430,964 - -0.6
430,964 + -1.5
430,964 - -0.7
430,968 - -2.3
430,970 + -0.8
430,974 + -2.3
430,976 + -0.5
430,977 + -1.2
430,978 - -1.3
430,978 - -1.3
430,978 - 0.4
430,979 + 1.6
430,979 + -0.6
430,999 + -2.5
431,003 - -0.1
431,003 - -0.0
431,008 - -0.7
431,010 - -2.3
431,012 - 0.1
431,012 - -3.3
431,016 - -1.0
431,016 - -4.1
431,023 + -1.9
431,024 - -2.9
431,027 - -2.1
431,028 + -2.2
431,029 - 1.1
431,031 - -3.0
431,031 - -0.5
431,032 + 0.3
431,033 - -1.2
431,040 - -1.1
431,041 + -0.4
431,049 + -1.7
431,052 - -0.0
431,052 - -1.5
431,063 - -2.1
431,065 - -0.7
431,066 + -0.3
431,066 + -2.1
431,084 - -1.5
431,087 - -0.4
431,089 + -0.2
431,101 - -1.6
431,110 - -1.3
431,110 + -1.7
431,114 + -3.5
431,120 - -0.9
431,120 + -2.1
431,122 - 0.7
431,143 - -0.7
431,150 - -1.1
431,158 - -1.1
431,159 - -1.1
431,169 - -0.9
431,190 + 1.1
431,193 + -0.6
431,196 - 0.3
431,214 - -2.6
431,237 - -2.1
431,244 + 11517 mRNA_3149 0.10 -0.3
431,265 - 11517 mRNA_3149 0.11 -0.1
431,275 + 11517 mRNA_3149 0.11 -1.4
431,285 + 11517 mRNA_3149 0.11 -1.3
431,298 - 11517 mRNA_3149 0.12 -0.5
431,310 - 11517 mRNA_3149 0.12 1.5
431,310 - 11517 mRNA_3149 0.12 -0.3
431,322 - 11517 mRNA_3149 0.12 -0.9
431,323 - 11517 mRNA_3149 0.12 -0.6
431,332 + 11517 mRNA_3149 0.13 -2.0
431,351 + 11517 mRNA_3149 0.13 -2.1
431,376 + 11517 mRNA_3149 0.14 -1.7
431,456 - 11517 mRNA_3149 0.16 -1.1
431,471 + 11517 mRNA_3149 0.17 -1.9
431,482 - 11517 mRNA_3149 0.17 1.7
431,487 - 11517 mRNA_3149 0.17 -3.7
431,487 - 11517 mRNA_3149 0.17 -0.2
431,516 + 11517 mRNA_3149 0.18 -1.0
431,605 + 11517 mRNA_3149 0.20 -0.0
431,608 - 11517 mRNA_3149 0.20 -0.4
431,614 - 11517 mRNA_3149 0.21 -0.7
431,625 - 11517 mRNA_3149 0.21 -1.6
431,626 + 11517 mRNA_3149 0.21 -0.3
431,735 + 11517 mRNA_3149 0.24 -4.1
431,765 - 11517 mRNA_3149 0.25 -0.8
431,899 - 11517 mRNA_3149 0.29 -2.6
431,920 - 11517 mRNA_3149 0.29 -2.8
432,051 + 11517 mRNA_3149 0.33 -2.4
432,058 - 11517 mRNA_3149 0.33 -1.2
432,090 - 11517 mRNA_3149 0.34 -2.3
432,196 + 11517 mRNA_3149 0.37 -1.5
432,310 + 11517 mRNA_3149 0.40 -0.8
432,349 + 11517 mRNA_3149 0.41 -1.6
432,361 + 11517 mRNA_3149 0.42 0.1
432,471 + 11517 mRNA_3149 0.45 -0.9
432,513 - 11517 mRNA_3149 0.46 -1.6
432,747 - 11517 mRNA_3149 0.53 -1.5
432,778 - 11517 mRNA_3149 0.54 -0.3
432,788 + 11517 mRNA_3149 0.54 -2.3
432,790 - 11517 mRNA_3149 0.54 -2.1
432,800 + 11517 mRNA_3149 0.54 -3.0
432,883 - 11517 mRNA_3149 0.56 -2.3
432,886 - 11517 mRNA_3149 0.57 -2.2
432,887 + 11517 mRNA_3149 0.57 -0.9
432,929 + 11517 mRNA_3149 0.58 -1.8
432,945 - 11517 mRNA_3149 0.58 2.2
432,959 - 11517 mRNA_3149 0.59 -0.7
432,969 + 11517 mRNA_3149 0.59 -1.4
433,396 + 11517 mRNA_3149 0.71 0.4
433,575 - 11517 mRNA_3149 0.76 -0.2
433,800 + 11517 mRNA_3149 0.82 -1.7
433,811 - 11517 mRNA_3149 0.83 -2.2
433,814 + 11517 mRNA_3149 0.83 -3.6
433,814 - 11517 mRNA_3149 0.83 -1.3
434,112 + -0.4
434,119 - -1.1
434,238 - -2.9
434,255 - -1.7
434,278 - -0.6
434,296 - -1.6
434,379 + -2.3
434,393 + -0.2
434,395 + -0.3
434,395 - -1.2
434,399 - -2.6
434,400 - -1.1
434,514 - -0.8
434,518 + -0.1
434,524 + -2.2
434,531 - 0.4
434,541 + -1.3
434,544 + -2.7
434,544 - -3.5
434,644 - 0.0
434,665 + -0.9
434,671 + -1.5
434,672 - -0.6
434,675 - -1.0
434,677 - -3.7
434,689 - 0.8
434,689 + -1.0
434,691 + -2.9
434,694 + -2.0
434,699 + 2.3
434,720 - -0.6
434,757 - -1.7
434,817 - -2.5
434,819 + -1.9
434,836 + -2.6
434,865 + -2.0
434,978 + -1.4
434,983 - 2.4
434,992 + 0.2
434,997 - -2.0
435,105 - -0.3
435,109 - -1.7
435,123 - -1.0
435,407 + 11518 mRNA_3150 0.29 0.6