Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3146

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514 mRNA_3147: 11515 - Hypothetical Protein, at 427660 to 428214 11515

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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422,923 - 11513 mRNA_3145 0.43 -1.6
423,146 + 11513 mRNA_3145 0.61 0.7
423,160 - 11513 mRNA_3145 0.62 -2.7
423,386 + 11513 mRNA_3145 0.79 -1.8
423,418 - 11513 mRNA_3145 0.82 -2.0
423,449 - 11513 mRNA_3145 0.84 -1.7
423,553 - -0.3
423,553 + -0.1
423,587 - -0.6
423,640 - -4.8
423,685 + -0.7
423,708 + -1.6
423,963 - -3.3
424,268 - 11514 mRNA_3146 0.13 -0.1
424,452 + 11514 mRNA_3146 0.19 -2.8
424,455 - 11514 mRNA_3146 0.19 -1.1
424,517 + 11514 mRNA_3146 0.21 1.2
424,562 - 11514 mRNA_3146 0.22 -0.4
424,713 + 11514 mRNA_3146 0.26 -1.3
424,714 + 11514 mRNA_3146 0.26 -0.6
424,805 + 11514 mRNA_3146 0.29 -1.4
424,844 + 11514 mRNA_3146 0.30 -1.5
424,847 - 11514 mRNA_3146 0.30 -3.0
425,001 - 11514 mRNA_3146 0.34 0.2
425,158 - 11514 mRNA_3146 0.39 -1.6
425,188 - 11514 mRNA_3146 0.40 -0.7
425,191 - 11514 mRNA_3146 0.40 0.5
425,196 - 11514 mRNA_3146 0.40 -0.6
425,203 + 11514 mRNA_3146 0.40 -3.8
425,203 + 11514 mRNA_3146 0.40 -1.7
425,203 + 11514 mRNA_3146 0.40 -0.6
425,282 - 11514 mRNA_3146 0.42 -1.0
425,286 - 11514 mRNA_3146 0.42 -0.5
425,573 + 11514 mRNA_3146 0.51 -3.9
425,575 - 11514 mRNA_3146 0.51 -0.5
425,898 - 11514 mRNA_3146 0.60 -1.5
426,037 + 11514 mRNA_3146 0.64 -0.2
426,058 - 11514 mRNA_3146 0.64 -1.4
426,323 - 11514 mRNA_3146 0.72 -0.8
426,639 - 11514 mRNA_3146 0.81 -2.2
426,921 - 11514 mRNA_3146 0.89 -2.4
426,952 + 11514 mRNA_3146 0.90 -1.0
427,071 + -1.4
427,081 - -0.7
427,083 + -1.1
427,205 - 0.5
427,205 - -1.4
427,210 - -2.2
427,214 + -2.7
427,226 + -0.1
427,228 - 0.6
427,237 + -1.3
427,238 + -1.5
427,390 - -0.7
427,392 - -0.6
427,399 + -2.2
427,404 + -1.6
427,406 - -2.6
427,412 - 0.2
427,413 + -2.6
427,422 - -1.9
427,424 + -2.3
427,520 - -0.8
427,525 - -1.2
427,537 + -0.2
427,669 + -3.1
427,682 + -2.4
427,713 - -0.7
427,793 + 11515 mRNA_3147 0.24 0.7
427,812 - 11515 mRNA_3147 0.27 -1.2
428,009 - 11515 mRNA_3147 0.63 -0.4
428,074 - 11515 mRNA_3147 0.75 -2.4
428,288 + -2.7