Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3144

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415939 to 417358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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416,634 - 11511 mRNA_3143 0.49 -1.8
416,758 - 11511 mRNA_3143 0.58 -2.9
416,791 + 11511 mRNA_3143 0.60 -1.7
416,807 + 11511 mRNA_3143 0.61 0.1
416,884 - 11511 mRNA_3143 0.67 0.5
416,914 - 11511 mRNA_3143 0.69 -2.8
416,955 + 11511 mRNA_3143 0.72 -2.8
417,060 - 11511 mRNA_3143 0.79 0.7
417,093 + 11511 mRNA_3143 0.81 0.6
417,095 + 11511 mRNA_3143 0.81 0.7
417,197 - 11511 mRNA_3143 0.89 -1.8
417,214 + 11511 mRNA_3143 0.90 -3.0
417,228 - -1.7
417,239 + -1.9
417,250 - -0.6
417,378 - -0.9
417,383 - -1.4
417,385 + -2.2
417,392 - -2.5
417,392 + -1.6
417,395 - -1.7
417,396 - -2.2
417,396 - -1.6
417,398 - -1.0
417,402 - -0.8
417,405 + -0.2
417,423 + 0.9
417,427 + -2.3
417,431 - 0.5
417,436 - 1.0
417,446 - 0.8
417,449 - -1.9
417,454 + 0.3
417,462 + -2.4
417,463 + -1.2
417,478 + -1.3
417,495 - -1.9
417,557 + -1.6
417,576 + -2.2
417,607 - 0.7
417,609 + -1.1
417,616 - -0.7
417,776 - 0.1
417,777 + -0.9
417,955 + 11512 mRNA_3144 0.11 -2.9
418,097 - 11512 mRNA_3144 0.15 -0.4
418,476 - 11512 mRNA_3144 0.25 -0.3
419,024 - 11512 mRNA_3144 0.39 -2.7
419,439 + 11512 mRNA_3144 0.50 -1.6
420,002 + 11512 mRNA_3144 0.64 -1.7
420,178 - 11512 mRNA_3144 0.69 -2.2
420,278 - 11512 mRNA_3144 0.72 -1.5
420,296 - 11512 mRNA_3144 0.72 -3.2
420,432 + 11512 mRNA_3144 0.76 -3.1
420,644 - 11512 mRNA_3144 0.81 -2.9
420,740 + 11512 mRNA_3144 0.84 -1.1
420,845 - 11512 mRNA_3144 0.86 -1.5
420,911 - 11512 mRNA_3144 0.88 2.2
420,952 + 11512 mRNA_3144 0.89 -2.1
421,046 - -0.1
421,054 + -1.2
421,068 + 0.8
421,164 - 0.7
421,329 - 1.1
421,438 - -2.7
421,469 - -0.5
421,470 - -1.6
421,476 + -0.6
421,478 - -1.5
421,480 + -1.2
421,494 - -0.3
421,526 - 0.7
421,594 + -0.6
421,596 - -2.4
421,603 - -0.1
421,614 + 0.1
421,617 - -2.4
421,618 + 0.2
421,622 - -2.4
421,622 - -0.1
421,624 - 0.2
421,634 - 0.2
421,652 + -1.3
421,656 + 0.8
421,658 + -1.8
421,660 + 0.1
421,667 + -0.7
421,676 + -0.0
421,717 - -1.4
421,730 + -0.8
421,730 - -0.2
421,732 - -0.8
421,735 + -3.7
421,737 - -3.2
421,738 + -1.1
421,739 + -0.4
421,741 - -3.4
421,747 - -2.6
421,753 - -2.3
421,758 + -0.1
421,759 + 0.7
421,759 + -0.7
421,760 + -0.6
421,760 + -0.4
421,760 + -1.3
421,762 - -1.8
421,763 - -2.0
421,764 - 0.2
421,765 + -0.5
421,766 + -0.8
421,768 + -2.2
421,776 + 1.0
421,779 + -0.2
421,781 + -1.1
421,784 + -0.3
421,793 + -0.6
421,796 - -1.8
421,798 - -1.5
421,798 - 0.3
421,806 - -2.7
421,806 - -2.1
421,811 + -0.5
421,815 + -0.6
421,825 + -1.3
421,833 - -2.7
421,940 + 0.9
421,942 - -1.4
421,956 - -0.8
421,956 - -1.4
421,959 - 0.9
421,963 + -2.2
421,969 - -1.9
421,972 - -3.9
421,981 - -3.5
421,984 - 0.9
421,985 - -0.0
421,997 - -0.0
421,998 + -1.3
421,999 + -2.3
422,002 + -1.1
422,018 - -1.4
422,020 + 0.3
422,020 - -0.8
422,031 + -2.0
422,031 + -0.9
422,040 - -1.8
422,042 + -0.9
422,043 - 1.9
422,044 - -3.3
422,048 + -0.2
422,050 + -1.2
422,051 + 0.9
422,052 + -1.7
422,066 - -1.6
422,072 + 0.1
422,072 - -1.9
422,074 - -3.3
422,075 - -0.3
422,085 + -2.9
422,113 - 0.3
422,132 + -2.7
422,145 + -3.6
422,163 + -2.3
422,165 - -1.6
422,174 + -0.4
422,174 + -0.8
422,188 - -2.5
422,195 - -1.9
422,205 + -1.9
422,207 + -0.5
422,212 - -3.6
422,214 + -1.5
422,221 - -0.0
422,223 - -3.0
422,237 - -3.1
422,255 - 0.4
422,271 + -0.8
422,276 + 0.1
422,280 + 1.3
422,314 - -3.7
422,351 - -1.6
422,364 - -1.2