Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3138

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407732 to 408630 11505 mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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407,871 + 11505 mRNA_3137 0.15 -0.5
407,875 - 11505 mRNA_3137 0.16 -0.1
407,932 + 11505 mRNA_3137 0.22 -3.2
408,220 - 11505 mRNA_3137 0.54 -0.5
408,266 + 11505 mRNA_3137 0.59 0.6
408,267 - 11505 mRNA_3137 0.60 -1.6
408,311 - 11505 mRNA_3137 0.64 -0.4
408,357 - 11505 mRNA_3137 0.70 -2.4
408,510 - 11505 mRNA_3137 0.87 -0.3
408,556 + -0.3
408,566 + 0.4
408,638 - -3.6
408,652 - -0.7
408,665 + -1.8
408,669 - -0.4
408,669 - -3.9
408,673 - 0.4
408,676 - 0.5
408,681 - -1.4
408,782 + -0.5
408,813 - -0.6
408,948 + -2.0
408,962 - 11506 mRNA_3138 0.11 -0.6
408,971 + 11506 mRNA_3138 0.12 0.6
408,971 - 11506 mRNA_3138 0.12 -1.8
408,976 - 11506 mRNA_3138 0.12 -1.7
409,061 - 11506 mRNA_3138 0.19 -0.0
409,081 - 11506 mRNA_3138 0.21 -0.5
409,105 - 11506 mRNA_3138 0.23 -0.8
409,107 + 11506 mRNA_3138 0.23 -2.4
409,109 - 11506 mRNA_3138 0.23 -1.7
409,134 + 11506 mRNA_3138 0.25 -0.9
409,418 + 11506 mRNA_3138 0.49 -0.8
409,533 - 11506 mRNA_3138 0.59 -2.0
409,674 - 11506 mRNA_3138 0.70 -0.7
409,714 - 11506 mRNA_3138 0.74 -0.9
409,887 + 11506 mRNA_3138 0.88 -1.0
409,919 + -2.8
409,981 + -1.4
409,982 - -0.5
410,015 - -2.0
410,053 - -1.5
410,116 + -0.8
410,149 + -3.0
410,325 + 0.1
410,342 + 11507 mRNA_3139 0.13 -2.0
410,423 - 11507 mRNA_3139 0.27 -1.5
410,460 + 11507 mRNA_3139 0.33 -2.4
410,477 - 11507 mRNA_3139 0.36 -0.4
410,560 + 11507 mRNA_3139 0.51 0.2
410,576 + 11507 mRNA_3139 0.54 1.6
410,576 + 11507 mRNA_3139 0.54 -1.4
410,587 + 11507 mRNA_3139 0.56 -2.2
410,593 + 11507 mRNA_3139 0.57 -0.6
410,644 - 11507 mRNA_3139 0.66 -1.8
410,720 + 11507 mRNA_3139 0.79 -0.2
410,758 - 11507 mRNA_3139 0.86 -2.6
410,795 + -1.0
410,798 - -0.4
410,855 + -1.8
410,860 - -1.5
410,866 - -1.9
410,927 + -3.6
410,955 - -0.7
410,963 - 0.2
410,978 - -0.6
410,998 + 0.3
411,007 + -2.0
411,012 - -1.0
411,019 + -3.3
411,021 + -1.9
411,021 + -0.6