Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3133

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391641 to 394728 11499 mRNA_3132: 11500 - Hypothetical Protein, at 394889 to 395179 11500 mRNA_3133: 11501 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 395348 to 397742 11501 mRNA_3134: 11502 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 397818 to 398852 11502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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394,367 + 11499 mRNA_3131 0.88 -1.8
394,489 - -2.1
394,497 - -0.0
394,510 + -1.9
394,517 - -0.8
394,644 - -0.3
394,801 + -2.5
394,805 - -1.1
394,810 - -1.1
394,824 + -3.9
394,869 - -1.1
394,938 + 11500 mRNA_3132 0.17 -0.4
394,993 - 11500 mRNA_3132 0.36 -0.6
395,031 - 11500 mRNA_3132 0.49 -1.9
395,225 - -1.4
395,255 + 1.1
395,379 - -0.4
395,508 + -2.6
395,515 - -0.8
395,643 + 11501 mRNA_3133 0.12 -0.8
395,683 + 11501 mRNA_3133 0.14 -0.2
395,705 + 11501 mRNA_3133 0.15 -0.2
395,820 + 11501 mRNA_3133 0.20 0.4
395,832 - 11501 mRNA_3133 0.20 -2.7
395,860 - 11501 mRNA_3133 0.21 -1.7
395,919 - 11501 mRNA_3133 0.24 -0.9
395,967 - 11501 mRNA_3133 0.26 -1.6
396,015 + 11501 mRNA_3133 0.28 -1.6
396,092 - 11501 mRNA_3133 0.31 -0.5
396,254 - 11501 mRNA_3133 0.38 0.0
396,400 - 11501 mRNA_3133 0.44 -0.2
396,517 - 11501 mRNA_3133 0.49 -2.0
396,576 - 11501 mRNA_3133 0.51 -3.2
396,838 + 11501 mRNA_3133 0.62 -3.5
396,842 + 11501 mRNA_3133 0.62 -1.8
397,047 - 11501 mRNA_3133 0.71 -2.7
397,287 + 11501 mRNA_3133 0.81 -1.6
397,432 - 11501 mRNA_3133 0.87 0.0
397,708 + -1.7
397,715 - -1.4
397,869 - -1.8
397,888 + 0.7
398,054 - 11502 mRNA_3134 0.23 -2.7
398,140 - 11502 mRNA_3134 0.31 -3.1
398,273 + 11502 mRNA_3134 0.44 -2.7
398,295 - 11502 mRNA_3134 0.46 -1.5
398,296 + 11502 mRNA_3134 0.46 -2.2
398,306 + 11502 mRNA_3134 0.47 -0.5
398,456 + 11502 mRNA_3134 0.62 -2.3
398,594 + 11502 mRNA_3134 0.75 -2.5
398,598 + 11502 mRNA_3134 0.75 -0.8
398,601 + 11502 mRNA_3134 0.76 -0.7
398,606 - 11502 mRNA_3134 0.76 -0.3
398,607 + 11502 mRNA_3134 0.76 -0.4
398,607 + 11502 mRNA_3134 0.76 -1.4
398,729 - 11502 mRNA_3134 0.88 -0.2
398,734 - 11502 mRNA_3134 0.89 -0.7