Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3130

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387441 to 391334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391641 to 394728 11499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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386,534 + -0.6
386,545 - -1.5
386,549 - -1.2
386,566 - -1.3
386,713 - -2.2
386,731 + -0.6
386,845 - 0.2
386,855 - -1.4
387,131 + 0.3
387,132 - -1.6
387,132 - -2.0
387,145 + -2.0
387,148 + -0.6
387,152 - -2.2
387,154 + -3.7
387,154 + -0.8
387,159 + -1.6
387,161 + 0.1
387,168 + -0.2
387,173 + -0.9
387,292 - -1.1
387,300 + -2.6
387,307 + -1.8
387,308 - 0.7
387,312 - -0.1
387,313 + -0.3
387,332 + 0.1
387,333 + -0.6
387,464 - -0.2
387,465 - 0.3
387,472 + 0.4
387,489 + -1.7
387,515 + -2.1
387,607 + -3.1
387,608 - -1.0
387,617 - -0.5
387,633 + -3.1
387,894 - 11498 mRNA_3130 0.12 0.9
387,899 + 11498 mRNA_3130 0.12 -2.9
387,899 + 11498 mRNA_3130 0.12 -2.0
388,068 + 11498 mRNA_3130 0.16 -3.4
388,225 - 11498 mRNA_3130 0.20 -1.5
388,343 - 11498 mRNA_3130 0.23 0.5
388,364 - 11498 mRNA_3130 0.24 -1.0
388,371 + 11498 mRNA_3130 0.24 -0.2
388,444 - 11498 mRNA_3130 0.26 -0.8
388,463 + 11498 mRNA_3130 0.26 -1.5
388,471 - 11498 mRNA_3130 0.26 -2.5
388,752 + 11498 mRNA_3130 0.34 -1.9
388,914 + 11498 mRNA_3130 0.38 -2.1
389,076 - 11498 mRNA_3130 0.42 -1.1
389,124 - 11498 mRNA_3130 0.43 -2.7
389,222 - 11498 mRNA_3130 0.46 0.3
389,392 + 11498 mRNA_3130 0.50 -0.2
389,397 - 11498 mRNA_3130 0.50 -1.6
389,510 + 11498 mRNA_3130 0.53 0.0
389,779 - 11498 mRNA_3130 0.60 -1.2
389,834 + 11498 mRNA_3130 0.61 -0.6
389,985 + 11498 mRNA_3130 0.65 1.0
390,138 + 11498 mRNA_3130 0.69 -2.1
390,270 - 11498 mRNA_3130 0.73 -1.6
390,376 + 11498 mRNA_3130 0.75 -1.1
390,417 + 11498 mRNA_3130 0.76 -1.3
390,538 + 11498 mRNA_3130 0.80 -1.6
390,549 - 11498 mRNA_3130 0.80 0.1
390,703 - 11498 mRNA_3130 0.84 -1.3
390,706 + 11498 mRNA_3130 0.84 -1.9
390,719 + 11498 mRNA_3130 0.84 -2.4
390,721 + 11498 mRNA_3130 0.84 -0.5
390,854 - 11498 mRNA_3130 0.88 0.4
390,896 - 11498 mRNA_3130 0.89 -0.5
391,116 - -1.4
391,132 + -2.2
391,152 - -1.7
391,305 + -0.0
391,309 + -1.1
391,424 - 0.8
391,585 + -1.7
391,588 + 0.3
391,622 - 0.5
392,104 - 11499 mRNA_3131 0.15 -1.7
392,295 - 11499 mRNA_3131 0.21 -1.0
392,303 + 11499 mRNA_3131 0.21 0.3
392,319 - 11499 mRNA_3131 0.22 -2.1
392,331 - 11499 mRNA_3131 0.22 -0.0