Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3128

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496 mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385430 to 386354 11497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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383,425 + 11495 mRNA_3127 0.72 -1.1
383,455 + 11495 mRNA_3127 0.73 -2.5
383,585 - 11495 mRNA_3127 0.77 -0.6
383,599 - 11495 mRNA_3127 0.78 -3.0
383,613 + 11495 mRNA_3127 0.78 -1.4
383,762 - 11495 mRNA_3127 0.83 -1.8
384,060 + -1.2
384,122 - -2.3
384,271 + -2.5
384,348 + -0.9
384,349 - -0.2
384,352 + -2.3
384,442 + 11496 mRNA_3128 0.12 -0.1
384,476 - 11496 mRNA_3128 0.15 -1.8
384,485 - 11496 mRNA_3128 0.17 -3.2
384,508 - 11496 mRNA_3128 0.19 0.3
384,531 + 11496 mRNA_3128 0.22 0.1
384,599 + 11496 mRNA_3128 0.30 -1.7
384,619 + 11496 mRNA_3128 0.32 -2.5
384,650 + 11496 mRNA_3128 0.36 -0.4
384,741 + 11496 mRNA_3128 0.46 -2.1
384,741 + 11496 mRNA_3128 0.46 -0.9
384,741 + 11496 mRNA_3128 0.46 -2.9
384,741 + 11496 mRNA_3128 0.46 0.2
384,744 + 11496 mRNA_3128 0.47 1.3
384,922 - 11496 mRNA_3128 0.67 0.2
384,929 + 11496 mRNA_3128 0.68 -0.1
384,948 + 11496 mRNA_3128 0.70 -1.1
384,948 + 11496 mRNA_3128 0.70 -2.4
385,095 + 11496 mRNA_3128 0.87 -1.6
385,095 + 11496 mRNA_3128 0.87 0.6
385,237 + -2.2
385,246 - 0.1
385,249 + -2.5
385,256 + -2.0
385,258 - 1.0
385,365 - 0.0
385,376 + -0.2
385,386 - -1.2
385,532 - 11497 mRNA_3129 0.11 -1.2
385,689 - 11497 mRNA_3129 0.28 0.4
385,696 - 11497 mRNA_3129 0.29 -0.4
385,825 - 11497 mRNA_3129 0.43 -0.3
385,838 + 11497 mRNA_3129 0.44 -1.8
385,958 + 11497 mRNA_3129 0.57 -0.2
385,987 - 11497 mRNA_3129 0.60 -0.4
386,110 - 11497 mRNA_3129 0.74 -1.9
386,116 - 11497 mRNA_3129 0.74 -4.9
386,127 - 11497 mRNA_3129 0.75 -3.3
386,136 - 11497 mRNA_3129 0.76 -1.7
386,139 - 11497 mRNA_3129 0.77 -1.8