Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3127

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3126: 11494 - KOG0019 Molecular chaperone (HSP90 family), at 380662 to 381306 11494 mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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380,571 + -2.5
380,603 + -3.5
380,720 - -0.5
380,740 + 11494 mRNA_3126 0.12 -0.7
380,851 - 11494 mRNA_3126 0.29 0.4
380,854 - 11494 mRNA_3126 0.30 -1.2
380,854 + 11494 mRNA_3126 0.30 -2.1
380,868 + 11494 mRNA_3126 0.32 -1.8
380,875 + 11494 mRNA_3126 0.33 -1.8
380,877 + 11494 mRNA_3126 0.33 -2.4
380,882 + 11494 mRNA_3126 0.34 -1.0
380,888 + 11494 mRNA_3126 0.35 -2.5
380,888 + 11494 mRNA_3126 0.35 -1.6
380,935 - 11494 mRNA_3126 0.42 -1.5
380,940 + 11494 mRNA_3126 0.43 -0.0
381,015 + 11494 mRNA_3126 0.55 -2.3
381,024 - 11494 mRNA_3126 0.56 -0.9
381,027 - 11494 mRNA_3126 0.57 -4.4
381,161 - 11494 mRNA_3126 0.77 -2.5
381,171 - 11494 mRNA_3126 0.79 -1.5
381,173 + 11494 mRNA_3126 0.79 -0.7
381,293 + -1.6
381,458 - -2.3
381,581 + -3.1
381,614 + -0.2
381,833 + 11495 mRNA_3127 0.17 -0.1
381,886 + 11495 mRNA_3127 0.19 0.5
381,995 + 11495 mRNA_3127 0.23 -3.5
382,017 + 11495 mRNA_3127 0.23 0.1
382,179 + 11495 mRNA_3127 0.29 -0.9
382,184 + 11495 mRNA_3127 0.29 1.2
382,428 + 11495 mRNA_3127 0.37 -1.5
382,559 + 11495 mRNA_3127 0.42 -0.6
382,588 + 11495 mRNA_3127 0.43 -1.5
382,600 + 11495 mRNA_3127 0.43 -1.5
382,710 - 11495 mRNA_3127 0.47 -1.0
382,852 - 11495 mRNA_3127 0.52 -1.4
383,243 - 11495 mRNA_3127 0.65 0.4
383,261 + 11495 mRNA_3127 0.66 -0.4
383,315 - 11495 mRNA_3127 0.68 -1.1
383,323 + 11495 mRNA_3127 0.68 -3.5
383,425 + 11495 mRNA_3127 0.72 -1.1
383,455 + 11495 mRNA_3127 0.73 -2.5
383,585 - 11495 mRNA_3127 0.77 -0.6
383,599 - 11495 mRNA_3127 0.78 -3.0
383,613 + 11495 mRNA_3127 0.78 -1.4
383,762 - 11495 mRNA_3127 0.83 -1.8
384,060 + -1.2
384,122 - -2.3
384,271 + -2.5
384,348 + -0.9
384,349 - -0.2
384,352 + -2.3
384,442 + 11496 mRNA_3128 0.12 -0.1
384,476 - 11496 mRNA_3128 0.15 -1.8
384,485 - 11496 mRNA_3128 0.17 -3.2
384,508 - 11496 mRNA_3128 0.19 0.3
384,531 + 11496 mRNA_3128 0.22 0.1
384,599 + 11496 mRNA_3128 0.30 -1.7
384,619 + 11496 mRNA_3128 0.32 -2.5
384,650 + 11496 mRNA_3128 0.36 -0.4
384,741 + 11496 mRNA_3128 0.46 -2.1
384,741 + 11496 mRNA_3128 0.46 -0.9
384,741 + 11496 mRNA_3128 0.46 -2.9
384,741 + 11496 mRNA_3128 0.46 0.2
384,744 + 11496 mRNA_3128 0.47 1.3
384,922 - 11496 mRNA_3128 0.67 0.2
384,929 + 11496 mRNA_3128 0.68 -0.1
384,948 + 11496 mRNA_3128 0.70 -1.1
384,948 + 11496 mRNA_3128 0.70 -2.4
385,095 + 11496 mRNA_3128 0.87 -1.6
385,095 + 11496 mRNA_3128 0.87 0.6
385,237 + -2.2
385,246 - 0.1
385,249 + -2.5