Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3117

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483 mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356999 to 357616 11484 mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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356,839 - -1.0
356,990 - -0.9
357,161 + 11484 mRNA_3116 0.26 -0.2
357,164 - 11484 mRNA_3116 0.27 -2.3
357,196 + 11484 mRNA_3116 0.32 -1.3
357,287 - 11484 mRNA_3116 0.47 -0.5
357,305 + 11484 mRNA_3116 0.50 -1.1
357,306 + 11484 mRNA_3116 0.50 -1.0
357,356 - 11484 mRNA_3116 0.58 -1.6
357,426 + 11484 mRNA_3116 0.69 0.1
357,578 - 0.0
357,582 - -1.6
357,604 - -0.9
357,610 - -2.6
357,643 - -4.5
357,705 + -0.2
357,757 + -0.1
358,047 + 11485 mRNA_3117 0.27 -2.8
358,058 - 11485 mRNA_3117 0.28 -0.8
358,077 - 11485 mRNA_3117 0.30 -0.5
358,107 - 11485 mRNA_3117 0.33 -0.6
358,368 - 11485 mRNA_3117 0.57 -1.0
358,471 - 11485 mRNA_3117 0.66 -2.6
358,472 + 11485 mRNA_3117 0.67 -1.6
358,614 + 11485 mRNA_3117 0.80 -1.4
358,627 - 11485 mRNA_3117 0.81 -1.7
358,627 + 11485 mRNA_3117 0.81 0.2
358,638 - 11485 mRNA_3117 0.82 -3.2
358,734 + -2.8
358,761 - -1.0
358,782 + -0.2
358,892 + -2.5
358,905 + 0.2
358,905 - -2.0
358,907 - 1.0
358,912 + -0.1
358,916 - -0.4
358,927 + -0.7
358,930 + -2.2
358,934 + 0.2
359,049 - -3.1
359,052 - -1.4
359,058 - -1.0
359,059 + -1.0
359,064 - 0.0
359,070 + -1.0
359,084 + -2.7
359,086 + -0.9
359,195 - -1.0
359,231 - -1.2
359,231 - -0.4
359,269 + 0.1
359,303 - -1.3
359,346 - -1.7
359,369 + 0.1
359,492 - -0.4
359,497 + 0.6
359,528 - -1.7
359,549 - -0.0
359,553 + -3.6
359,618 - 0.1
359,644 - 1.0
359,659 + -1.1
359,668 + -1.8
359,668 + -1.9
359,801 - 11486 mRNA_3118 0.14 -1.3
359,804 + 11486 mRNA_3118 0.14 -0.7