Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3115

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354324 to 355899 11482 mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483 mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356999 to 357616 11484 mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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355,242 + 11482 mRNA_3114 0.58 0.9
355,382 + 11482 mRNA_3114 0.67 1.1
355,531 - 11482 mRNA_3114 0.77 0.9
355,534 - 11482 mRNA_3114 0.77 -0.8
355,542 - 11482 mRNA_3114 0.77 -1.2
355,547 + 11482 mRNA_3114 0.78 -0.8
355,807 + -2.1
355,826 + -2.5
355,832 + 0.6
355,971 - -0.9
355,978 + 0.0
355,981 + -3.3
355,982 + -2.0
356,010 + -2.3
356,111 - 0.8
356,130 + -1.7
356,131 + -2.0
356,259 - 11483 mRNA_3115 0.11 -0.3
356,262 - 11483 mRNA_3115 0.11 -2.4
356,282 - 11483 mRNA_3115 0.14 -0.5
356,358 - 11483 mRNA_3115 0.24 -1.2
356,415 + 11483 mRNA_3115 0.32 -0.5
356,571 + 11483 mRNA_3115 0.53 -2.8
356,577 + 11483 mRNA_3115 0.54 -1.5
356,579 + 11483 mRNA_3115 0.54 -0.3
356,732 - 11483 mRNA_3115 0.75 -3.0
356,839 - -1.0
356,990 - -0.9
357,161 + 11484 mRNA_3116 0.26 -0.2
357,164 - 11484 mRNA_3116 0.27 -2.3
357,196 + 11484 mRNA_3116 0.32 -1.3
357,287 - 11484 mRNA_3116 0.47 -0.5
357,305 + 11484 mRNA_3116 0.50 -1.1
357,306 + 11484 mRNA_3116 0.50 -1.0
357,356 - 11484 mRNA_3116 0.58 -1.6
357,426 + 11484 mRNA_3116 0.69 0.1
357,578 - 0.0
357,582 - -1.6
357,604 - -0.9
357,610 - -2.6
357,643 - -4.5
357,705 + -0.2
357,757 + -0.1