Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3114

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352715 to 353874 11481 mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354324 to 355899 11482 mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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353,347 - 11481 mRNA_3113 0.54 -0.1
353,364 + 11481 mRNA_3113 0.56 -2.0
353,502 + 11481 mRNA_3113 0.68 -3.3
353,507 - 11481 mRNA_3113 0.68 -0.4
353,537 - 11481 mRNA_3113 0.71 -2.8
353,604 + 11481 mRNA_3113 0.77 -2.6
353,668 + 11481 mRNA_3113 0.82 -0.3
353,774 - -2.3
353,781 + -1.5
353,783 - -0.5
353,795 - -2.4
353,805 + 0.4
353,967 + -1.3
353,976 + -2.4
354,041 - -1.0
354,076 - -1.5
354,078 - 0.8
354,083 + -2.6
354,087 - 0.4
354,089 + -1.6
354,091 + -1.7
354,094 - -2.2
354,097 + -0.1
354,100 + 0.9
354,101 - -1.4
354,103 + 0.0
354,223 - 0.5
354,248 + -0.6
354,266 + -4.3
354,519 - 11482 mRNA_3114 0.12 -1.8
354,538 + 11482 mRNA_3114 0.14 -2.1
354,557 - 11482 mRNA_3114 0.15 0.1
354,670 - 11482 mRNA_3114 0.22 -0.3
354,949 + 11482 mRNA_3114 0.40 -0.5
355,112 - 11482 mRNA_3114 0.50 -1.0
355,242 + 11482 mRNA_3114 0.58 0.9
355,382 + 11482 mRNA_3114 0.67 1.1
355,531 - 11482 mRNA_3114 0.77 0.9
355,534 - 11482 mRNA_3114 0.77 -0.8
355,542 - 11482 mRNA_3114 0.77 -1.2
355,547 + 11482 mRNA_3114 0.78 -0.8
355,807 + -2.1
355,826 + -2.5
355,832 + 0.6
355,971 - -0.9
355,978 + 0.0
355,981 + -3.3
355,982 + -2.0
356,010 + -2.3
356,111 - 0.8
356,130 + -1.7
356,131 + -2.0
356,259 - 11483 mRNA_3115 0.11 -0.3
356,262 - 11483 mRNA_3115 0.11 -2.4
356,282 - 11483 mRNA_3115 0.14 -0.5
356,358 - 11483 mRNA_3115 0.24 -1.2
356,415 + 11483 mRNA_3115 0.32 -0.5
356,571 + 11483 mRNA_3115 0.53 -2.8
356,577 + 11483 mRNA_3115 0.54 -1.5
356,579 + 11483 mRNA_3115 0.54 -0.3
356,732 - 11483 mRNA_3115 0.75 -3.0
356,839 - -1.0