Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3109

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346099 to 349205 11478

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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343,695 + 11476 mRNA_3108 0.80 -1.4
343,859 - 11476 mRNA_3108 0.85 -1.6
344,002 - 11476 mRNA_3108 0.89 -0.2
344,131 - -1.0
344,132 + -1.9
344,134 + -0.9
344,135 - 0.4
344,142 - -2.3
344,155 - -1.6
344,269 + -0.7
344,277 - 0.2
344,283 + -1.8
344,292 - -0.1
344,292 - -0.2
344,298 - -1.7
344,299 + -2.0
344,302 + -2.5
344,306 + -2.0
344,437 - 0.2
344,438 - -0.6
344,439 - -2.6
344,451 - 0.5
344,451 + -1.9
344,457 + -1.2
344,457 - -3.3
344,458 + -2.0
344,549 - -3.2
344,575 - -0.6
344,575 + -0.6
344,582 - -2.4
344,584 - -0.8
344,586 - -2.3
344,588 - -2.1
344,589 + -2.0
344,595 - -3.0
344,596 + -2.6
344,603 + -0.6
344,614 + -1.8
344,733 - -2.2
344,741 + -1.6
344,746 - -1.4
344,749 + 11477 mRNA_3109 0.10 -1.9
344,864 - 11477 mRNA_3109 0.19 -2.0
344,872 - 11477 mRNA_3109 0.19 -1.3
344,875 + 11477 mRNA_3109 0.20 -1.3
344,901 + 11477 mRNA_3109 0.22 -2.7
345,007 - 11477 mRNA_3109 0.30 -2.3
345,018 + 11477 mRNA_3109 0.30 -2.2
345,042 + 11477 mRNA_3109 0.32 -1.3
345,060 - 11477 mRNA_3109 0.33 -3.1
345,141 - 11477 mRNA_3109 0.40 -0.8
345,142 + 11477 mRNA_3109 0.40 -1.5
345,165 + 11477 mRNA_3109 0.41 0.1
345,306 - 11477 mRNA_3109 0.52 -4.1
345,430 - 11477 mRNA_3109 0.61 -1.7
345,438 + 11477 mRNA_3109 0.62 0.4
345,473 - 11477 mRNA_3109 0.64 -0.5
345,581 + 11477 mRNA_3109 0.73 -0.9
345,621 + 11477 mRNA_3109 0.76 -0.1
345,914 - -1.9
346,065 + -0.1
346,186 + -1.6
346,189 - -2.6
346,432 + 11478 mRNA_3110 0.11 -2.9
346,452 - 11478 mRNA_3110 0.11 -1.1
346,597 + 11478 mRNA_3110 0.16 0.1
346,618 - 11478 mRNA_3110 0.17 -4.5
346,666 - 11478 mRNA_3110 0.18 -1.2
346,700 - 11478 mRNA_3110 0.19 0.6
346,757 + 11478 mRNA_3110 0.21 -0.1
346,772 + 11478 mRNA_3110 0.22 0.3
346,798 - 11478 mRNA_3110 0.22 -2.2