Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3108

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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339,885 - 11475 mRNA_3107 0.46 -2.2
339,899 - 11475 mRNA_3107 0.47 -2.1
340,066 - 11475 mRNA_3107 0.58 -0.4
340,193 - 11475 mRNA_3107 0.66 -2.2
340,195 - 11475 mRNA_3107 0.66 -3.2
340,288 - 11475 mRNA_3107 0.72 -4.8
340,635 + -2.5
340,676 - -1.5
340,790 - -1.1
340,907 - -0.4
341,035 - 0.4
341,059 - -1.3
341,067 + -0.7
341,086 - -2.3
341,250 + 11476 mRNA_3108 0.11 -2.5
341,659 + 11476 mRNA_3108 0.23 -3.5
341,682 + 11476 mRNA_3108 0.24 -3.1
341,785 + 11476 mRNA_3108 0.27 2.2
341,810 - 11476 mRNA_3108 0.27 -2.2
342,229 + 11476 mRNA_3108 0.39 -2.5
342,398 + 11476 mRNA_3108 0.44 -0.3
342,416 - 11476 mRNA_3108 0.44 -0.7
342,490 - 11476 mRNA_3108 0.46 -2.2
342,511 + 11476 mRNA_3108 0.47 -2.6
342,529 + 11476 mRNA_3108 0.47 -1.5
342,802 - 11476 mRNA_3108 0.55 -0.7
342,827 + 11476 mRNA_3108 0.56 -0.3
342,975 + 11476 mRNA_3108 0.60 0.1
342,985 - 11476 mRNA_3108 0.60 -0.8
343,106 - 11476 mRNA_3108 0.64 -1.2
343,277 + 11476 mRNA_3108 0.68 -1.7
343,306 + 11476 mRNA_3108 0.69 0.6
343,565 + 11476 mRNA_3108 0.77 -1.2
343,597 + 11476 mRNA_3108 0.77 -3.0
343,695 + 11476 mRNA_3108 0.80 -1.4
343,859 - 11476 mRNA_3108 0.85 -1.6
344,002 - 11476 mRNA_3108 0.89 -0.2
344,131 - -1.0
344,132 + -1.9
344,134 + -0.9
344,135 - 0.4
344,142 - -2.3
344,155 - -1.6
344,269 + -0.7
344,277 - 0.2
344,283 + -1.8
344,292 - -0.1
344,292 - -0.2
344,298 - -1.7
344,299 + -2.0
344,302 + -2.5
344,306 + -2.0
344,437 - 0.2
344,438 - -0.6
344,439 - -2.6
344,451 - 0.5
344,451 + -1.9
344,457 + -1.2
344,457 - -3.3
344,458 + -2.0
344,549 - -3.2
344,575 - -0.6
344,575 + -0.6
344,582 - -2.4
344,584 - -0.8
344,586 - -2.3
344,588 - -2.1
344,589 + -2.0
344,595 - -3.0
344,596 + -2.6
344,603 + -0.6
344,614 + -1.8
344,733 - -2.2
344,741 + -1.6
344,746 - -1.4
344,749 + 11477 mRNA_3109 0.10 -1.9
344,864 - 11477 mRNA_3109 0.19 -2.0
344,872 - 11477 mRNA_3109 0.19 -1.3
344,875 + 11477 mRNA_3109 0.20 -1.3
344,901 + 11477 mRNA_3109 0.22 -2.7
345,007 - 11477 mRNA_3109 0.30 -2.3
345,018 + 11477 mRNA_3109 0.30 -2.2
345,042 + 11477 mRNA_3109 0.32 -1.3
345,060 - 11477 mRNA_3109 0.33 -3.1
345,141 - 11477 mRNA_3109 0.40 -0.8
345,142 + 11477 mRNA_3109 0.40 -1.5
345,165 + 11477 mRNA_3109 0.41 0.1
345,306 - 11477 mRNA_3109 0.52 -4.1