Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3105

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334494 to 336059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336211 to 338758 11474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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333,499 - -2.1
333,500 + -2.5
333,501 + -1.9
333,501 + 1.0
333,502 + -3.7
333,514 + 0.9
333,516 - 0.2
333,518 - -0.5
333,519 + -2.1
333,520 + -0.5
333,523 - -2.5
333,523 + -3.7
333,532 - 0.2
333,537 + -0.4
333,554 - -0.2
333,582 + -2.9
333,646 - -2.6
333,648 - -1.7
333,653 + -1.7
333,657 + -2.2
333,657 + -1.2
333,662 + 0.2
333,663 - -1.2
333,663 - -1.5
333,664 - -0.2
333,664 + -2.9
333,665 + 1.7
333,666 - -1.4
333,667 - -0.6
333,674 - -3.4
333,675 - -2.7
333,676 - 1.0
333,676 + -0.7
333,676 + 0.7
333,681 - -2.5
333,705 + 1.1
333,706 - -0.8
333,706 - 0.1
333,706 - -0.6
333,706 - -1.0
333,707 - -2.4
333,708 - 0.5
333,708 - -1.4
333,708 - -0.3
333,718 + -1.4
333,718 - -0.8
333,720 - -0.2
333,729 - -0.4
333,730 - -0.7
333,733 - -2.6
333,735 + -1.7
333,749 + -1.4
333,754 - -1.2
333,767 - -2.5
333,768 + 2.6
333,783 + -1.3
333,788 + -2.2
333,798 + -1.3
333,843 + -0.3
333,889 - -0.3
333,889 - -0.9
333,905 - 0.1
333,905 - -2.9
333,906 + -2.2
333,910 - -3.5
333,914 - -2.6
333,915 + -2.1
333,920 + -1.4
333,923 + -0.9
333,925 - -1.9
333,929 + 0.6
333,968 + -0.1
334,021 + -0.5
334,045 - 0.1
334,073 + -0.8
334,086 - 1.0
334,088 + -3.0
334,089 + -2.4
334,107 + 1.0
334,117 + -1.0
334,195 - -0.5
334,207 - 0.1
334,214 - -1.2
334,214 - -1.6
334,217 - -3.5
334,225 + -1.0
334,227 + -0.9
334,228 + -1.0
334,234 - -0.9
334,246 - -1.7
334,248 - -0.2
334,249 + -0.6
334,253 - -1.8
334,259 + -3.6
334,380 + -1.1
334,392 - -0.0
334,427 + -1.7
334,519 - 0.2
334,521 - -0.5
334,523 - -0.5
334,526 + -1.2
334,552 + -3.2
334,555 + -2.1
334,835 + 11473 mRNA_3105 0.22 -2.7
334,970 + 11473 mRNA_3105 0.30 0.9
334,970 - 11473 mRNA_3105 0.30 -0.5
334,983 - 11473 mRNA_3105 0.31 -2.8
335,142 - 11473 mRNA_3105 0.41 -3.0
335,163 - 11473 mRNA_3105 0.43 -1.2
335,744 + 11473 mRNA_3105 0.80 -0.6
335,862 - 11473 mRNA_3105 0.87 -2.8
336,033 + 0.3
336,033 - -0.3
336,034 - -0.6
336,036 + -1.3
336,061 - -0.7
336,077 + 0.2
336,140 - -0.9
336,147 - -1.1
336,159 - -3.0
336,161 - -0.6
336,170 - 0.4
336,173 + 0.8
336,175 - 0.5
336,178 + -1.7
336,187 - -1.3
336,190 + 0.0
336,198 + -0.5
336,205 - -1.5
336,205 + -0.5
336,312 - -0.2
336,323 + -1.6
336,327 + -3.5
336,329 + -2.8
336,341 - -1.1
336,345 + -1.0
336,457 - -0.9
336,459 + -1.3
336,481 - 11474 mRNA_3106 0.11 -1.1
336,485 + 11474 mRNA_3106 0.11 -1.0
336,491 - 11474 mRNA_3106 0.11 -1.3
336,634 - 11474 mRNA_3106 0.17 -1.1
336,639 + 11474 mRNA_3106 0.17 -1.7
336,648 - 11474 mRNA_3106 0.17 -2.1
336,649 - 11474 mRNA_3106 0.17 -2.3
336,775 + 11474 mRNA_3106 0.22 0.9
336,787 - 11474 mRNA_3106 0.23 -2.4
336,935 + 11474 mRNA_3106 0.28 -1.2