Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3097

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310272 to 311367 11464 mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311599 to 312739 11465 mRNA_3098: 11466 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 312938 to 315396 11466

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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310,692 + 11464 mRNA_3096 0.38 -1.2
310,693 + 11464 mRNA_3096 0.38 -1.2
310,851 + 11464 mRNA_3096 0.53 -0.9
310,993 - 11464 mRNA_3096 0.66 0.1
311,068 - 11464 mRNA_3096 0.73 -1.0
311,120 + 11464 mRNA_3096 0.77 -3.1
311,310 + -2.1
311,321 - 0.3
311,400 - -0.1
311,405 - -0.1
311,545 - 0.6
311,558 - -2.0
311,564 - -1.9
311,564 - 0.3
311,565 - -2.2
311,568 - -1.1
311,577 + -2.3
311,583 + -0.9
311,589 + -2.7
311,592 + -0.4
311,670 - -3.0
311,704 + -0.4
311,717 + 11465 mRNA_3097 0.10 -2.9
311,725 + 11465 mRNA_3097 0.11 -0.8
311,758 + 11465 mRNA_3097 0.14 -0.5
311,850 - 11465 mRNA_3097 0.22 -1.9
311,869 - 11465 mRNA_3097 0.24 -0.2
312,026 - 11465 mRNA_3097 0.37 -0.6
312,032 + 11465 mRNA_3097 0.38 -1.4
312,136 + 11465 mRNA_3097 0.47 -0.1
312,233 + 11465 mRNA_3097 0.56 -1.5
312,462 + 11465 mRNA_3097 0.76 -0.3
312,462 + 11465 mRNA_3097 0.76 -2.0
312,469 + 11465 mRNA_3097 0.76 0.0
312,472 - 11465 mRNA_3097 0.77 -1.1
312,597 - 11465 mRNA_3097 0.87 -3.6
312,803 + -1.4
312,910 + -1.7
312,913 + -2.0
312,935 + 0.1
312,980 - -0.5
313,058 + -1.6
313,212 - 11466 mRNA_3098 0.11 -0.7
313,214 + 11466 mRNA_3098 0.11 -4.7
313,337 + 11466 mRNA_3098 0.16 -1.8
313,452 + 11466 mRNA_3098 0.21 -1.9
313,466 + 11466 mRNA_3098 0.21 -1.1
313,491 + 11466 mRNA_3098 0.22 -1.7
313,680 + 11466 mRNA_3098 0.30 -0.2