Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3096

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307460 to 310020 11463 mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310272 to 311367 11464 mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311599 to 312739 11465

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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309,341 - 11463 mRNA_3095 0.73 -0.6
309,354 - 11463 mRNA_3095 0.74 -0.3
309,460 - 11463 mRNA_3095 0.78 -3.0
309,505 + 11463 mRNA_3095 0.80 -2.7
309,515 - 11463 mRNA_3095 0.80 -1.2
309,591 - 11463 mRNA_3095 0.83 0.4
309,647 + 11463 mRNA_3095 0.85 -0.5
309,662 - 11463 mRNA_3095 0.86 -0.8
309,768 + -2.9
309,777 - -0.5
309,782 - 0.9
309,796 - -0.7
309,800 - -1.3
309,936 + -3.3
309,968 + 0.4
309,970 + -0.3
309,984 + -2.2
310,058 + -1.3
310,075 + -1.8
310,081 + -2.7
310,084 - -1.2
310,087 + -1.0
310,096 - 1.8
310,097 + -1.3
310,105 + -1.7
310,107 + -0.2
310,108 - -1.0
310,113 - -0.7
310,122 - -1.6
310,123 + -0.6
310,155 - -0.9
310,249 - -1.9
310,255 + -1.3
310,264 - -0.9
310,272 - -1.5
310,276 + -1.4
310,293 + -0.5
310,375 + -1.3
310,387 + 11464 mRNA_3096 0.10 -0.3
310,397 - 11464 mRNA_3096 0.11 -2.5
310,397 - 11464 mRNA_3096 0.11 -1.1
310,399 - 11464 mRNA_3096 0.12 -0.7
310,403 + 11464 mRNA_3096 0.12 -1.2
310,407 + 11464 mRNA_3096 0.12 -1.2
310,415 + 11464 mRNA_3096 0.13 -3.5
310,423 + 11464 mRNA_3096 0.14 -1.7
310,509 - 11464 mRNA_3096 0.22 -1.7
310,520 + 11464 mRNA_3096 0.23 0.4
310,531 - 11464 mRNA_3096 0.24 -2.2
310,550 - 11464 mRNA_3096 0.25 -0.1
310,563 + 11464 mRNA_3096 0.27 -1.3
310,566 - 11464 mRNA_3096 0.27 -0.9
310,571 - 11464 mRNA_3096 0.27 0.7
310,692 + 11464 mRNA_3096 0.38 -1.2
310,693 + 11464 mRNA_3096 0.38 -1.2
310,851 + 11464 mRNA_3096 0.53 -0.9
310,993 - 11464 mRNA_3096 0.66 0.1
311,068 - 11464 mRNA_3096 0.73 -1.0
311,120 + 11464 mRNA_3096 0.77 -3.1
311,310 + -2.1
311,321 - 0.3
311,400 - -0.1
311,405 - -0.1
311,545 - 0.6
311,558 - -2.0
311,564 - -1.9
311,564 - 0.3
311,565 - -2.2
311,568 - -1.1
311,577 + -2.3
311,583 + -0.9
311,589 + -2.7
311,592 + -0.4
311,670 - -3.0
311,704 + -0.4
311,717 + 11465 mRNA_3097 0.10 -2.9
311,725 + 11465 mRNA_3097 0.11 -0.8
311,758 + 11465 mRNA_3097 0.14 -0.5
311,850 - 11465 mRNA_3097 0.22 -1.9
311,869 - 11465 mRNA_3097 0.24 -0.2
312,026 - 11465 mRNA_3097 0.37 -0.6
312,032 + 11465 mRNA_3097 0.38 -1.4
312,136 + 11465 mRNA_3097 0.47 -0.1
312,233 + 11465 mRNA_3097 0.56 -1.5