Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3095

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305611 to 307227 11462 mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307460 to 310020 11463 mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310272 to 311367 11464

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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306,724 + 11462 mRNA_3094 0.69 0.8
306,852 - 11462 mRNA_3094 0.77 -0.3
306,857 - 11462 mRNA_3094 0.77 -0.4
306,973 - 11462 mRNA_3094 0.84 -4.2
307,007 - 11462 mRNA_3094 0.86 0.4
307,139 - -0.0
307,145 + -1.2
307,151 + -2.1
307,152 - 0.3
307,259 - -2.0
307,268 - -3.1
307,269 + -1.4
307,271 + 0.1
307,273 - -0.4
307,273 - -1.4
307,274 + -1.6
307,278 + 0.4
307,281 + -0.7
307,284 - 0.2
307,288 + -1.9
307,290 + -2.3
307,294 + -3.3
307,294 + -0.5
307,294 - -2.7
307,297 + -1.4
307,297 - -1.4
307,300 + -2.6
307,302 + -1.3
307,303 - -4.0
307,304 + 0.4
307,305 + -0.0
307,305 + 0.3
307,308 - -2.0
307,312 - -0.8
307,326 + 0.8
307,332 + -0.4
307,333 + -1.8
307,336 - -0.4
307,344 + -0.8
307,353 + 1.0
307,408 + -1.2
307,449 + 0.7
307,475 - -0.3
307,621 - -1.2
307,728 - 11463 mRNA_3095 0.10 -0.5
307,765 - 11463 mRNA_3095 0.12 -2.5
307,774 + 11463 mRNA_3095 0.12 -0.3
307,776 + 11463 mRNA_3095 0.12 -2.8
307,780 - 11463 mRNA_3095 0.12 0.4
307,781 + 11463 mRNA_3095 0.13 -1.1
307,902 - 11463 mRNA_3095 0.17 -1.7
308,226 - 11463 mRNA_3095 0.30 -0.6
308,277 - 11463 mRNA_3095 0.32 -2.2
308,610 - 11463 mRNA_3095 0.45 -1.0
308,690 + 11463 mRNA_3095 0.48 -0.0
308,754 - 11463 mRNA_3095 0.51 -0.4
308,754 - 11463 mRNA_3095 0.51 -0.7
309,190 + 11463 mRNA_3095 0.68 -1.1
309,341 - 11463 mRNA_3095 0.73 -0.6
309,354 - 11463 mRNA_3095 0.74 -0.3
309,460 - 11463 mRNA_3095 0.78 -3.0
309,505 + 11463 mRNA_3095 0.80 -2.7
309,515 - 11463 mRNA_3095 0.80 -1.2
309,591 - 11463 mRNA_3095 0.83 0.4
309,647 + 11463 mRNA_3095 0.85 -0.5
309,662 - 11463 mRNA_3095 0.86 -0.8
309,768 + -2.9
309,777 - -0.5
309,782 - 0.9
309,796 - -0.7
309,800 - -1.3
309,936 + -3.3
309,968 + 0.4
309,970 + -0.3
309,984 + -2.2
310,058 + -1.3
310,075 + -1.8
310,081 + -2.7
310,084 - -1.2
310,087 + -1.0
310,096 - 1.8
310,097 + -1.3
310,105 + -1.7
310,107 + -0.2
310,108 - -1.0
310,113 - -0.7
310,122 - -1.6
310,123 + -0.6
310,155 - -0.9
310,249 - -1.9
310,255 + -1.3
310,264 - -0.9
310,272 - -1.5
310,276 + -1.4
310,293 + -0.5
310,375 + -1.3
310,387 + 11464 mRNA_3096 0.10 -0.3
310,397 - 11464 mRNA_3096 0.11 -2.5
310,397 - 11464 mRNA_3096 0.11 -1.1
310,399 - 11464 mRNA_3096 0.12 -0.7
310,403 + 11464 mRNA_3096 0.12 -1.2
310,407 + 11464 mRNA_3096 0.12 -1.2
310,415 + 11464 mRNA_3096 0.13 -3.5
310,423 + 11464 mRNA_3096 0.14 -1.7
310,509 - 11464 mRNA_3096 0.22 -1.7
310,520 + 11464 mRNA_3096 0.23 0.4
310,531 - 11464 mRNA_3096 0.24 -2.2
310,550 - 11464 mRNA_3096 0.25 -0.1
310,563 + 11464 mRNA_3096 0.27 -1.3
310,566 - 11464 mRNA_3096 0.27 -0.9
310,571 - 11464 mRNA_3096 0.27 0.7
310,692 + 11464 mRNA_3096 0.38 -1.2
310,693 + 11464 mRNA_3096 0.38 -1.2
310,851 + 11464 mRNA_3096 0.53 -0.9
310,993 - 11464 mRNA_3096 0.66 0.1