Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3090

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457 mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296743 to 299433 11459

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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294,052 - 11457 mRNA_3089 0.34 -2.1
294,064 - 11457 mRNA_3089 0.36 2.0
294,079 + 11457 mRNA_3089 0.39 -1.4
294,167 + 11457 mRNA_3089 0.54 -2.3
294,209 - 11457 mRNA_3089 0.62 0.0
294,360 - 11457 mRNA_3089 0.88 0.5
294,390 + -0.1
294,391 - -1.0
294,542 - -1.1
294,550 + 0.4
294,550 - 0.6
294,550 - -0.2
294,557 + -2.6
294,562 + -2.0
294,563 + 0.0
294,564 - -1.7
294,567 - -2.2
294,595 + -2.6
294,596 - -4.1
294,819 - -2.0
294,833 - -0.2
294,847 + 0.2
294,977 - -0.7
294,984 - -2.0
294,996 + 0.8
295,044 - -1.6
295,138 - 11458 mRNA_3090 0.11 0.1
295,338 - 11458 mRNA_3090 0.22 -0.2
295,554 + 11458 mRNA_3090 0.33 -1.3
295,583 - 11458 mRNA_3090 0.35 -1.3
295,895 - 11458 mRNA_3090 0.51 -0.5
295,975 - 11458 mRNA_3090 0.55 -0.0
296,131 - 11458 mRNA_3090 0.63 -1.8
296,280 + 11458 mRNA_3090 0.71 -1.7
296,307 + 11458 mRNA_3090 0.73 -1.0
296,441 - 11458 mRNA_3090 0.80 -0.3
296,535 + 11458 mRNA_3090 0.85 0.3
296,585 + 11458 mRNA_3090 0.87 -2.6
296,678 - -1.1
296,858 - -0.4
296,877 - 0.6
297,195 - 11459 mRNA_3091 0.17 -0.8
297,324 + 11459 mRNA_3091 0.22 -1.1
297,437 - 11459 mRNA_3091 0.26 -1.6
297,582 - 11459 mRNA_3091 0.31 -2.0
297,582 + 11459 mRNA_3091 0.31 -2.6
297,631 + 11459 mRNA_3091 0.33 -3.1