Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3081

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278441 to 278932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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273,830 + 11448 mRNA_3080 0.83 0.0
273,833 + 11448 mRNA_3080 0.83 -0.7
273,934 + 11448 mRNA_3080 0.90 -1.0
274,113 + -1.1
274,113 + -0.7
274,122 + -2.6
274,246 + -2.3
274,257 + -2.3
274,259 + -0.9
274,259 - 0.0
274,267 + -0.2
274,272 + -1.2
274,273 + 1.3
274,284 + -2.0
274,285 - -0.9
274,285 - -2.9
274,286 - 0.2
274,295 + -0.3
274,295 + -3.1
274,296 - -1.5
274,301 + -2.0
274,332 + -1.5
274,356 - -0.6
274,357 + -0.3
274,357 + -2.0
274,393 - -0.4
274,393 - -0.2
274,413 + -3.0
274,417 + -0.7
274,421 - -3.5
274,433 - -3.2
274,437 + -2.9
274,452 + -0.1
274,452 - -2.9
274,536 + -0.8
274,542 - -0.3
274,545 + -1.8
274,568 - 1.2
274,587 + -1.2
274,695 + -3.1
274,697 + 0.7
274,807 + -1.0
274,815 - -2.7
274,827 - -0.7
274,836 - -1.0
274,867 - -1.6
274,952 - -1.6
274,983 - -0.5
275,000 + -1.3
275,119 + 11449 mRNA_3081 0.10 0.4
275,119 + 11449 mRNA_3081 0.10 -1.5
275,172 + 11449 mRNA_3081 0.12 -0.7
275,263 + 11449 mRNA_3081 0.15 -1.2
275,329 + 11449 mRNA_3081 0.17 1.0
275,479 + 11449 mRNA_3081 0.21 -1.3
275,557 - 11449 mRNA_3081 0.24 -2.7
275,587 + 11449 mRNA_3081 0.25 -0.3
275,610 + 11449 mRNA_3081 0.25 -1.8
275,734 - 11449 mRNA_3081 0.29 -0.5
275,884 + 11449 mRNA_3081 0.34 -0.4
275,887 + 11449 mRNA_3081 0.34 -1.8
276,035 + 11449 mRNA_3081 0.38 -3.9
276,143 - 11449 mRNA_3081 0.42 -2.8
276,173 + 11449 mRNA_3081 0.43 -2.6
276,207 + 11449 mRNA_3081 0.44 -0.2
276,213 - 11449 mRNA_3081 0.44 -1.7
276,311 - 11449 mRNA_3081 0.47 -4.1
276,492 + 11449 mRNA_3081 0.52 -3.0
276,495 - 11449 mRNA_3081 0.52 -1.7
276,592 + 11449 mRNA_3081 0.55 -0.9
276,619 - 11449 mRNA_3081 0.56 -1.0
276,621 - 11449 mRNA_3081 0.56 -1.1
276,622 - 11449 mRNA_3081 0.56 -1.4
276,651 + 11449 mRNA_3081 0.57 -1.1
276,751 - 11449 mRNA_3081 0.60 -1.8
276,764 - 11449 mRNA_3081 0.61 -1.5
276,771 - 11449 mRNA_3081 0.61 -1.3
276,777 + 11449 mRNA_3081 0.61 -0.6
276,790 + 11449 mRNA_3081 0.61 -2.2
276,815 + 11449 mRNA_3081 0.62 -1.2
277,210 + 11449 mRNA_3081 0.74 -0.4
277,221 - 11449 mRNA_3081 0.75 -0.9
277,232 - 11449 mRNA_3081 0.75 -0.4
277,241 - 11449 mRNA_3081 0.75 -0.3
277,595 + 11449 mRNA_3081 0.86 0.8
277,644 + 11449 mRNA_3081 0.87 -3.6
277,673 + 11449 mRNA_3081 0.88 -2.0
277,681 - 11449 mRNA_3081 0.89 -2.6
277,797 + -2.3
277,797 - -1.2
277,824 + -1.0
277,835 - -1.4
277,836 + -2.6
277,842 + -0.9
277,933 - 0.5
277,960 - -1.3
277,981 + 0.9
277,985 + -2.1
278,083 - -0.7
278,105 - -1.6
278,108 + 0.0
278,135 - -1.8
278,138 + -1.7
278,246 - 0.0
278,263 - 0.6
278,264 - -2.5
278,293 + 0.2
278,402 + -1.3
278,557 - 11450 mRNA_3082 0.24 -2.4
278,558 - 11450 mRNA_3082 0.24 -3.4
278,565 + 11450 mRNA_3082 0.25 -1.5
278,568 - 11450 mRNA_3082 0.26 -1.6
278,704 + 11450 mRNA_3082 0.53 -1.7
278,871 + 11450 mRNA_3082 0.87 0.1
278,986 - -0.6
278,990 - -2.7