Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3080

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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271,602 - 11447 mRNA_3079 0.50 -3.2
271,625 + 11447 mRNA_3079 0.52 -1.6
271,650 - 11447 mRNA_3079 0.54 0.7
271,669 - 11447 mRNA_3079 0.55 -0.9
271,710 - 11447 mRNA_3079 0.58 -1.2
271,710 - 11447 mRNA_3079 0.58 -2.4
271,757 - 11447 mRNA_3079 0.61 -0.4
271,906 + 11447 mRNA_3079 0.72 -0.1
271,953 + 11447 mRNA_3079 0.76 -3.4
272,120 - 11447 mRNA_3079 0.88 -1.1
272,174 + 1.0
272,189 + -1.0
272,331 + -0.3
272,339 + 0.9
272,466 - -1.1
272,493 - -2.1
272,581 + -1.2
272,620 - -2.0
272,903 - 11448 mRNA_3080 0.22 -2.1
273,232 - 11448 mRNA_3080 0.44 -1.0
273,328 - 11448 mRNA_3080 0.50 -1.5
273,384 - 11448 mRNA_3080 0.54 -1.9
273,503 - 11448 mRNA_3080 0.62 -2.3
273,513 + 11448 mRNA_3080 0.62 -0.3
273,519 - 11448 mRNA_3080 0.63 -0.8
273,830 + 11448 mRNA_3080 0.83 0.0
273,833 + 11448 mRNA_3080 0.83 -0.7
273,934 + 11448 mRNA_3080 0.90 -1.0
274,113 + -1.1
274,113 + -0.7
274,122 + -2.6
274,246 + -2.3
274,257 + -2.3
274,259 + -0.9
274,259 - 0.0
274,267 + -0.2
274,272 + -1.2
274,273 + 1.3
274,284 + -2.0
274,285 - -0.9
274,285 - -2.9
274,286 - 0.2
274,295 + -0.3
274,295 + -3.1
274,296 - -1.5
274,301 + -2.0
274,332 + -1.5
274,356 - -0.6
274,357 + -0.3
274,357 + -2.0
274,393 - -0.4
274,393 - -0.2
274,413 + -3.0
274,417 + -0.7
274,421 - -3.5
274,433 - -3.2
274,437 + -2.9
274,452 + -0.1
274,452 - -2.9
274,536 + -0.8
274,542 - -0.3
274,545 + -1.8
274,568 - 1.2
274,587 + -1.2
274,695 + -3.1
274,697 + 0.7
274,807 + -1.0
274,815 - -2.7
274,827 - -0.7
274,836 - -1.0
274,867 - -1.6
274,952 - -1.6
274,983 - -0.5
275,000 + -1.3