Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3078

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264209 to 265729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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264,914 - 11445 mRNA_3077 0.46 0.4
265,060 - 11445 mRNA_3077 0.56 -1.1
265,094 + 11445 mRNA_3077 0.58 0.2
265,114 + 11445 mRNA_3077 0.60 -1.9
265,122 + 11445 mRNA_3077 0.60 0.4
265,137 - 11445 mRNA_3077 0.61 0.5
265,148 - 11445 mRNA_3077 0.62 -0.5
265,153 + 11445 mRNA_3077 0.62 -0.0
265,160 - 11445 mRNA_3077 0.63 -2.5
265,180 - 11445 mRNA_3077 0.64 0.1
265,258 + 11445 mRNA_3077 0.69 -0.1
265,296 + 11445 mRNA_3077 0.71 -3.5
265,340 - 11445 mRNA_3077 0.74 0.2
265,415 - 11445 mRNA_3077 0.79 -1.6
265,426 - 11445 mRNA_3077 0.80 -0.2
265,433 - 11445 mRNA_3077 0.80 -0.0
265,437 - 11445 mRNA_3077 0.81 -1.6
265,437 - 11445 mRNA_3077 0.81 0.2
265,447 + 11445 mRNA_3077 0.81 -1.5
265,545 - 11445 mRNA_3077 0.88 -2.1
265,602 + -1.0
265,605 + -2.2
265,611 + -2.3
265,625 - -1.6
265,724 + 0.1
265,731 - -4.4
265,738 - -2.0
265,740 - -2.3
265,748 - -2.7
265,758 - -2.7
265,890 - -0.5
265,905 + -1.9
265,915 - -1.8
266,184 + -3.9
266,494 - 11446 mRNA_3078 0.13 -0.6
266,538 + 11446 mRNA_3078 0.14 -0.4
266,610 + 11446 mRNA_3078 0.15 -2.1
266,642 - 11446 mRNA_3078 0.16 -2.4
266,739 - 11446 mRNA_3078 0.18 0.1
266,769 - 11446 mRNA_3078 0.19 -1.4
266,800 + 11446 mRNA_3078 0.19 -1.1
266,847 + 11446 mRNA_3078 0.20 -1.4
266,872 - 11446 mRNA_3078 0.21 -2.3
267,083 + 11446 mRNA_3078 0.25 -1.9
267,086 - 11446 mRNA_3078 0.26 -2.4
267,089 + 11446 mRNA_3078 0.26 -0.5
267,090 + 11446 mRNA_3078 0.26 -3.5
267,114 + 11446 mRNA_3078 0.26 -0.1
267,138 + 11446 mRNA_3078 0.27 -1.2
267,145 - 11446 mRNA_3078 0.27 -1.8
267,351 - 11446 mRNA_3078 0.31 -3.6
267,366 + 11446 mRNA_3078 0.32 0.2
267,400 - 11446 mRNA_3078 0.32 -1.2
267,498 - 11446 mRNA_3078 0.34 0.6
267,507 + 11446 mRNA_3078 0.35 -1.0
267,508 + 11446 mRNA_3078 0.35 -0.1
267,663 - 11446 mRNA_3078 0.38 -0.2
267,750 + 11446 mRNA_3078 0.40 -1.2
267,784 - 11446 mRNA_3078 0.41 -2.5
267,965 + 11446 mRNA_3078 0.45 -1.1
267,998 + 11446 mRNA_3078 0.45 -2.8
268,003 + 11446 mRNA_3078 0.45 -0.2
268,019 + 11446 mRNA_3078 0.46 0.4
268,037 - 11446 mRNA_3078 0.46 -2.5
268,077 + 11446 mRNA_3078 0.47 -1.2
268,245 + 11446 mRNA_3078 0.51 1.5
268,403 - 11446 mRNA_3078 0.54 -0.9
268,403 - 11446 mRNA_3078 0.54 -2.4
268,452 + 11446 mRNA_3078 0.55 -0.7
268,535 - 11446 mRNA_3078 0.57 -0.8
268,653 - 11446 mRNA_3078 0.59 -2.6
268,825 + 11446 mRNA_3078 0.63 -2.6
269,043 - 11446 mRNA_3078 0.68 -3.3
269,138 - 11446 mRNA_3078 0.70 -1.0
269,246 - 11446 mRNA_3078 0.72 -0.1
269,255 - 11446 mRNA_3078 0.72 -2.7
269,338 + 11446 mRNA_3078 0.74 -0.2
269,523 - 11446 mRNA_3078 0.78 -0.7
269,652 + 11446 mRNA_3078 0.81 -1.1
269,684 - 11446 mRNA_3078 0.82 0.8
269,826 + 11446 mRNA_3078 0.85 -2.0
269,922 - 11446 mRNA_3078 0.87 1.2
269,924 - 11446 mRNA_3078 0.87 -0.5
269,982 + 11446 mRNA_3078 0.88 -1.4
270,119 + -2.1
270,132 - -0.9
270,172 - -1.7
270,278 + 0.2
270,280 + -0.6
270,282 - 1.0
270,407 - -1.9
270,407 - -0.7
270,407 - -2.7
270,415 - -1.7
270,538 + -1.0
270,558 + -3.3
270,569 - -2.6
270,578 + 0.1
270,579 + -3.4
270,700 - -1.4
270,701 - 0.0
270,701 - -1.2
270,711 + -1.7
270,717 + 0.6
270,721 - -1.8
270,728 - -0.1
270,732 + -0.3
270,857 - -0.9
270,859 - -2.4
270,890 + -0.6
271,039 - -2.9
271,163 - 11447 mRNA_3079 0.18 -3.8
271,182 - 11447 mRNA_3079 0.20 -0.1
271,327 + 11447 mRNA_3079 0.30 -0.3
271,423 - 11447 mRNA_3079 0.37 0.1
271,488 + 11447 mRNA_3079 0.42 2.3