Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3077

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261811 to 264179 11444 mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264209 to 265729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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263,261 - 11444 mRNA_3076 0.61 -0.4
263,337 + 11444 mRNA_3076 0.64 -1.1
263,497 + 11444 mRNA_3076 0.71 -0.1
263,640 - 11444 mRNA_3076 0.77 -1.8
263,682 - 11444 mRNA_3076 0.79 -1.9
263,685 + 11444 mRNA_3076 0.79 -3.4
263,846 - 11444 mRNA_3076 0.86 -1.4
264,076 - -1.0
264,076 - -1.2
264,110 + -0.1
264,131 + 0.6
264,256 + -0.6
264,278 + -1.4
264,278 + 0.6
264,282 + -2.3
264,369 - 11445 mRNA_3077 0.11 -0.3
264,402 + 11445 mRNA_3077 0.13 -0.8
264,706 - 11445 mRNA_3077 0.33 -1.7
264,758 - 11445 mRNA_3077 0.36 -1.4
264,817 - 11445 mRNA_3077 0.40 1.3
264,867 - 11445 mRNA_3077 0.43 -0.4
264,868 + 11445 mRNA_3077 0.43 -0.2
264,880 + 11445 mRNA_3077 0.44 -4.1
264,914 - 11445 mRNA_3077 0.46 0.4
265,060 - 11445 mRNA_3077 0.56 -1.1
265,094 + 11445 mRNA_3077 0.58 0.2
265,114 + 11445 mRNA_3077 0.60 -1.9
265,122 + 11445 mRNA_3077 0.60 0.4
265,137 - 11445 mRNA_3077 0.61 0.5
265,148 - 11445 mRNA_3077 0.62 -0.5
265,153 + 11445 mRNA_3077 0.62 -0.0
265,160 - 11445 mRNA_3077 0.63 -2.5
265,180 - 11445 mRNA_3077 0.64 0.1
265,258 + 11445 mRNA_3077 0.69 -0.1
265,296 + 11445 mRNA_3077 0.71 -3.5
265,340 - 11445 mRNA_3077 0.74 0.2
265,415 - 11445 mRNA_3077 0.79 -1.6
265,426 - 11445 mRNA_3077 0.80 -0.2
265,433 - 11445 mRNA_3077 0.80 -0.0
265,437 - 11445 mRNA_3077 0.81 -1.6
265,437 - 11445 mRNA_3077 0.81 0.2
265,447 + 11445 mRNA_3077 0.81 -1.5
265,545 - 11445 mRNA_3077 0.88 -2.1
265,602 + -1.0
265,605 + -2.2
265,611 + -2.3
265,625 - -1.6
265,724 + 0.1
265,731 - -4.4
265,738 - -2.0
265,740 - -2.3
265,748 - -2.7
265,758 - -2.7
265,890 - -0.5
265,905 + -1.9
265,915 - -1.8
266,184 + -3.9
266,494 - 11446 mRNA_3078 0.13 -0.6
266,538 + 11446 mRNA_3078 0.14 -0.4
266,610 + 11446 mRNA_3078 0.15 -2.1
266,642 - 11446 mRNA_3078 0.16 -2.4