Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3074

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248202 to 249247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249401 to 250160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252187 to 260484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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249,406 + -1.5
249,430 + -2.4
249,552 + 11441 mRNA_3073 0.20 -2.5
249,695 + 11441 mRNA_3073 0.39 -3.7
249,696 - 11441 mRNA_3073 0.39 -1.5
249,701 + 11441 mRNA_3073 0.39 0.1
249,762 - 11441 mRNA_3073 0.47 0.0
249,822 - 11441 mRNA_3073 0.55 1.0
249,841 + 11441 mRNA_3073 0.58 -2.3
249,845 + 11441 mRNA_3073 0.58 -0.7
249,858 + 11441 mRNA_3073 0.60 -0.9
249,860 + 11441 mRNA_3073 0.60 -2.2
249,861 + 11441 mRNA_3073 0.61 -1.2
249,898 + 11441 mRNA_3073 0.65 -1.7
249,927 - 11441 mRNA_3073 0.69 -1.6
249,978 + 11441 mRNA_3073 0.76 -0.7
249,983 - 11441 mRNA_3073 0.77 -1.9
250,002 + 11441 mRNA_3073 0.79 -0.8
250,015 + 11441 mRNA_3073 0.81 0.9
250,017 - 11441 mRNA_3073 0.81 -2.5
250,017 - 11441 mRNA_3073 0.81 -1.2
250,030 - 11441 mRNA_3073 0.83 -2.0
250,132 + -0.5
250,137 - -1.2
250,138 + -2.0
250,143 + -1.6
250,166 - -3.9
250,283 - -0.5
250,290 - -1.3
250,302 + 1.1
250,304 + -1.4
250,327 - -0.5
250,478 + 11442 mRNA_3074 0.15 -0.5
250,597 - 11442 mRNA_3074 0.22 -0.8
250,619 - 11442 mRNA_3074 0.23 -1.6
250,730 + 11442 mRNA_3074 0.30 -3.7
250,851 - 11442 mRNA_3074 0.37 -2.4
250,852 + 11442 mRNA_3074 0.37 -2.0
250,868 - 11442 mRNA_3074 0.38 -4.4
250,879 + 11442 mRNA_3074 0.38 0.1
250,986 + 11442 mRNA_3074 0.44 -1.6
251,009 + 11442 mRNA_3074 0.46 -0.9
251,073 - 11442 mRNA_3074 0.49 -0.5
251,113 + 11442 mRNA_3074 0.51 -0.4
251,138 - 11442 mRNA_3074 0.53 -0.7
251,156 + 11442 mRNA_3074 0.54 -1.7
251,443 - 11442 mRNA_3074 0.70 -1.7
251,570 - 11442 mRNA_3074 0.77 -0.6
251,577 + 11442 mRNA_3074 0.78 -0.7
251,720 + 11442 mRNA_3074 0.86 -1.5
251,734 - 11442 mRNA_3074 0.87 -0.6
251,738 + 11442 mRNA_3074 0.87 -1.1
251,739 + 11442 mRNA_3074 0.87 -1.7
251,739 - 11442 mRNA_3074 0.87 -1.1
251,761 + 11442 mRNA_3074 0.88 -0.4
251,833 + -3.2
251,853 - -0.5
251,854 + -2.4
251,867 + -1.0
251,869 + -1.2
251,879 + -2.0
251,891 + -1.7
251,896 - -2.4
251,980 - -2.7
251,981 + -2.8
251,988 - 0.5
252,011 + -0.3
252,031 - -2.0
252,043 + -1.1
252,043 + -1.3
252,051 - -0.1
252,054 + -1.6
252,054 + 0.1
252,057 - -0.6
252,073 - -2.2
252,176 - -0.6
252,176 - 0.1
252,205 - -1.9
252,342 + -0.8
252,437 + -1.7
252,453 + -0.7
252,501 + -0.4
252,541 + -0.9
252,647 - -1.8
252,653 + -0.2
252,777 + -2.9
252,914 + -4.5
252,917 + -2.9