Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3073

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248202 to 249247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249401 to 250160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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248,413 + 11440 mRNA_3072 0.20 -1.4
248,507 + 11440 mRNA_3072 0.29 0.9
248,537 - 11440 mRNA_3072 0.32 -1.3
248,546 + 11440 mRNA_3072 0.33 -2.8
248,651 + 11440 mRNA_3072 0.43 -0.0
248,686 - 11440 mRNA_3072 0.46 -1.0
248,827 - 11440 mRNA_3072 0.60 -2.3
248,923 - 11440 mRNA_3072 0.69 -1.0
248,928 + 11440 mRNA_3072 0.69 -1.3
248,964 + 11440 mRNA_3072 0.73 -2.4
248,973 + 11440 mRNA_3072 0.74 -0.3
249,059 + 11440 mRNA_3072 0.82 -1.7
249,406 + -1.5
249,430 + -2.4
249,552 + 11441 mRNA_3073 0.20 -2.5
249,695 + 11441 mRNA_3073 0.39 -3.7
249,696 - 11441 mRNA_3073 0.39 -1.5
249,701 + 11441 mRNA_3073 0.39 0.1
249,762 - 11441 mRNA_3073 0.47 0.0
249,822 - 11441 mRNA_3073 0.55 1.0
249,841 + 11441 mRNA_3073 0.58 -2.3
249,845 + 11441 mRNA_3073 0.58 -0.7
249,858 + 11441 mRNA_3073 0.60 -0.9
249,860 + 11441 mRNA_3073 0.60 -2.2
249,861 + 11441 mRNA_3073 0.61 -1.2
249,898 + 11441 mRNA_3073 0.65 -1.7
249,927 - 11441 mRNA_3073 0.69 -1.6
249,978 + 11441 mRNA_3073 0.76 -0.7
249,983 - 11441 mRNA_3073 0.77 -1.9
250,002 + 11441 mRNA_3073 0.79 -0.8
250,015 + 11441 mRNA_3073 0.81 0.9
250,017 - 11441 mRNA_3073 0.81 -2.5
250,017 - 11441 mRNA_3073 0.81 -1.2
250,030 - 11441 mRNA_3073 0.83 -2.0
250,132 + -0.5
250,137 - -1.2
250,138 + -2.0
250,143 + -1.6
250,166 - -3.9
250,283 - -0.5
250,290 - -1.3
250,302 + 1.1
250,304 + -1.4
250,327 - -0.5
250,478 + 11442 mRNA_3074 0.15 -0.5
250,597 - 11442 mRNA_3074 0.22 -0.8
250,619 - 11442 mRNA_3074 0.23 -1.6
250,730 + 11442 mRNA_3074 0.30 -3.7
250,851 - 11442 mRNA_3074 0.37 -2.4
250,852 + 11442 mRNA_3074 0.37 -2.0
250,868 - 11442 mRNA_3074 0.38 -4.4
250,879 + 11442 mRNA_3074 0.38 0.1
250,986 + 11442 mRNA_3074 0.44 -1.6
251,009 + 11442 mRNA_3074 0.46 -0.9
251,073 - 11442 mRNA_3074 0.49 -0.5
251,113 + 11442 mRNA_3074 0.51 -0.4
251,138 - 11442 mRNA_3074 0.53 -0.7
251,156 + 11442 mRNA_3074 0.54 -1.7